Wall clock time and date at job start Sun Mar 29 2020 21:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47072 * 2 1 4 4 C 1.36938 * 120.00494 * 275.65749 * 3 2 1 5 5 H 1.08002 * 119.99576 * 33.99081 * 4 3 2 6 6 C 1.38803 * 120.00102 * 213.98713 * 4 3 2 7 7 N 1.31624 * 120.00006 * 22.95867 * 6 4 3 8 8 Si 1.86798 * 120.00104 * 202.96120 * 6 4 3 9 9 H 1.48499 * 109.47017 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47354 * 119.99861 * 8 6 4 11 11 H 1.48502 * 109.47549 * 239.99896 * 8 6 4 12 12 C 1.46508 * 119.99671 * 95.65818 * 3 2 1 13 13 C 1.50705 * 109.47000 * 270.00210 * 12 3 2 14 14 C 1.38231 * 120.00200 * 89.99809 * 13 12 3 15 15 C 1.38226 * 120.00184 * 179.97438 * 14 13 12 16 16 C 1.38237 * 119.99923 * 359.97438 * 15 14 13 17 17 C 1.38238 * 119.99960 * 0.27670 * 16 15 14 18 18 C 1.38230 * 119.99709 * 359.51134 * 17 16 15 19 19 H 1.09004 * 109.46847 * 59.99545 * 1 2 3 20 20 H 1.08995 * 109.46758 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.46771 * 299.99836 * 1 2 3 22 22 H 1.09003 * 109.47219 * 240.00769 * 2 1 3 23 23 H 1.08990 * 109.47381 * 120.00468 * 2 1 3 24 24 H 0.97003 * 119.99747 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.47057 * 150.00061 * 12 3 2 26 26 H 1.09006 * 109.46806 * 29.99643 * 12 3 2 27 27 H 1.08001 * 120.00033 * 359.97438 * 14 13 12 28 28 H 1.08003 * 120.00677 * 180.02562 * 15 14 13 29 29 H 1.08003 * 119.99927 * 180.02562 * 16 15 14 30 30 H 1.07995 * 120.00025 * 179.72789 * 17 16 15 31 31 H 1.08002 * 120.00096 * 180.27390 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1364 2.0658 -1.1801 5 1 1.4324 1.8888 -1.9798 6 6 3.1607 2.9873 -1.3484 7 7 4.2517 2.8995 -0.6173 8 14 2.9909 4.3521 -2.6125 9 1 1.6791 4.2315 -3.2979 10 1 3.0742 5.6697 -1.9326 11 1 4.0840 4.2406 -3.6114 12 6 2.3805 2.0301 1.2627 13 6 1.1715 2.7239 1.8357 14 6 0.3271 2.0449 2.6940 15 6 -0.7814 2.6813 3.2200 16 6 -1.0453 3.9971 2.8881 17 6 -0.2038 4.6745 2.0256 18 6 0.9072 4.0393 1.5031 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5137 -0.8901 23 1 1.8934 -0.5138 0.8898 24 1 4.9677 3.5432 -0.7353 25 1 3.1679 2.7619 1.0823 26 1 2.7368 1.2792 1.9679 27 1 0.5335 1.0171 2.9537 28 1 -1.4410 2.1510 3.8910 29 1 -1.9113 4.4945 3.2994 30 1 -0.4124 5.7010 1.7628 31 1 1.5672 4.5699 0.8327 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019852161.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:00 Heat of formation + Delta-G solvation = 23.803953 kcal Electronic energy + Delta-G solvation = -13404.610011 eV Core-core repulsion = 11264.689649 eV Total energy + Delta-G solvation = -2139.920362 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.03644 -37.52017 -33.86229 -32.68930 -31.60954 -30.30400 -27.37452 -25.23651 -23.23713 -22.55027 -21.69217 -18.68087 -17.47508 -16.87626 -15.98216 -15.86463 -15.58515 -15.24412 -14.36896 -14.23742 -14.02280 -13.50021 -13.36054 -13.04913 -12.93436 -12.67990 -12.32790 -12.19776 -11.91745 -11.71508 -11.57618 -11.50130 -10.53930 -9.64531 -9.40757 -8.61622 -7.84043 -5.41756 0.65478 0.68083 1.40573 1.44750 1.54290 2.48869 3.03034 3.24123 3.87278 4.14704 4.25100 4.33432 4.43150 4.43463 4.67344 4.77716 4.83184 4.87458 4.98542 5.07339 5.27909 5.31059 5.33324 5.58109 5.60373 5.70006 5.73044 5.79754 6.07302 6.31199 6.47254 7.14660 7.85699 8.36508 9.11859 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.028510 B = 0.013561 C = 0.010780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.882854 B = 2064.284832 C = 2596.658918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.137 3.863 3 N -0.592 5.592 4 C -0.256 4.256 5 H 0.050 0.950 6 C -0.033 4.033 7 N -0.915 5.915 8 Si 0.946 3.054 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.289 1.289 12 C 0.172 3.828 13 C -0.088 4.088 14 C -0.126 4.126 15 C -0.123 4.123 16 C -0.136 4.136 17 C -0.131 4.131 18 C -0.128 4.128 19 H 0.028 0.972 20 H 0.067 0.933 21 H 0.051 0.949 22 H 0.033 0.967 23 H 0.050 0.950 24 H 0.252 0.748 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.122 0.878 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.131 0.869 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 -0.173 6.734 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.313 5.313 4 C -0.386 4.386 5 H 0.068 0.932 6 C -0.230 4.230 7 N -0.559 5.559 8 Si 0.774 3.226 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.216 1.216 12 C 0.047 3.953 13 C -0.090 4.090 14 C -0.144 4.144 15 C -0.141 4.141 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.147 4.147 19 H 0.047 0.953 20 H 0.086 0.914 21 H 0.070 0.930 22 H 0.051 0.949 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.140 0.860 28 H 0.164 0.836 29 H 0.165 0.835 30 H 0.149 0.851 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.853 -0.129 6.700 11.103 hybrid contribution 0.409 0.804 -0.955 1.313 sum -8.444 0.675 5.745 10.236 Atomic orbital electron populations 1.22209 0.97759 1.00712 1.00770 1.20988 0.93502 0.85400 0.98938 1.43967 1.76025 1.09448 1.01844 1.19160 1.06765 1.18997 0.93691 0.93219 1.25614 0.93997 1.03160 1.00261 1.70098 1.05254 1.36523 1.44050 0.85550 0.77621 0.80168 0.79250 1.19656 1.21262 1.21588 1.19939 0.93554 0.96294 0.85545 1.20981 0.98958 0.94080 0.95001 1.21131 0.95522 0.99760 0.98029 1.21399 0.97129 0.95308 1.00227 1.21340 1.00134 0.95149 0.98776 1.21331 0.94797 1.00517 0.98223 1.21031 0.98405 0.95463 0.99827 0.95259 0.91397 0.92981 0.94867 0.93209 0.93840 0.90814 0.94640 0.86032 0.83581 0.83516 0.85131 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.66 10.20 71.98 0.73 -4.92 16 2 C 0.14 5.81 6.44 86.38 0.56 6.36 16 3 N -0.59 -29.90 2.44 -706.31 -1.73 -31.63 16 4 C -0.26 -14.22 9.48 84.03 0.80 -13.43 16 5 H 0.05 2.81 7.93 -2.91 -0.02 2.79 16 6 C -0.03 -1.86 4.95 84.86 0.42 -1.44 16 7 N -0.91 -53.47 11.31 21.65 0.24 -53.22 16 8 Si 0.95 45.08 29.61 68.60 2.03 47.11 16 9 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 12 C 0.17 8.34 5.46 85.63 0.47 8.81 16 13 C -0.09 -3.69 5.44 -19.87 -0.11 -3.80 16 14 C -0.13 -4.36 7.87 22.27 0.18 -4.19 16 15 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 16 C -0.14 -3.86 10.05 22.27 0.22 -3.64 16 17 C -0.13 -4.40 10.05 22.27 0.22 -4.18 16 18 C -0.13 -5.39 9.70 22.27 0.22 -5.17 16 19 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 20 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.05 1.87 6.13 -2.39 -0.01 1.86 16 22 H 0.03 1.45 8.09 -2.39 -0.02 1.43 16 23 H 0.05 1.93 7.83 -2.39 -0.02 1.91 16 24 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 25 H 0.07 4.10 5.26 -2.39 -0.01 4.09 16 26 H 0.04 1.62 7.80 -2.38 -0.02 1.60 16 27 H 0.12 3.86 8.02 -2.91 -0.02 3.83 16 28 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 29 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 30 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.09 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -61.88 262.26 5.57 -56.31 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 1.09 Total: 10.33 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 3.93 Total: -28.90 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -1.48 Total: -84.85 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -61.88 5.57 -56.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019852161.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.115 kcal (2) G-P(sol) polarization free energy of solvation -61.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds