Wall clock time and date at job start Sun Mar 29 2020 21:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50699 * 109.47075 * 2 1 4 4 C 1.38306 * 119.96204 * 270.27370 * 3 2 1 5 5 C 1.38265 * 120.14784 * 180.27606 * 4 3 2 6 6 C 1.38133 * 120.07407 * 359.44555 * 5 4 3 7 7 C 1.38886 * 119.92263 * 0.28038 * 6 5 4 8 8 N 1.39676 * 120.07159 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00261 * 359.97438 * 8 7 6 10 10 C 1.50696 * 109.47149 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00130 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99882 * 180.02562 * 10 9 8 13 13 N 1.31515 * 119.99764 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 119.99971 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47243 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.47208 * 119.99431 * 14 12 10 17 17 H 1.48499 * 109.47320 * 239.99615 * 14 12 10 18 18 C 1.38089 * 119.96065 * 89.99699 * 3 2 1 19 19 H 1.08997 * 109.46728 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47199 * 300.00266 * 1 2 3 21 21 H 1.09000 * 109.46839 * 60.00307 * 1 2 3 22 22 H 1.08996 * 109.47199 * 239.99734 * 2 1 3 23 23 H 1.08999 * 109.46691 * 120.00224 * 2 1 3 24 24 H 1.08001 * 119.92853 * 0.02562 * 4 3 2 25 25 H 1.08002 * 119.96572 * 179.72711 * 5 4 3 26 26 H 1.07999 * 120.03792 * 180.25490 * 6 5 4 27 27 H 0.97003 * 119.99650 * 180.02562 * 8 7 6 28 28 H 1.08998 * 109.47324 * 300.00914 * 9 8 7 29 29 H 1.09000 * 109.46859 * 60.00373 * 9 8 7 30 30 H 0.96999 * 119.99505 * 180.02562 * 13 12 10 31 31 H 1.07998 * 120.03755 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2572 2.0740 -1.1982 5 6 2.7235 3.3756 -1.2027 6 6 2.9555 4.0319 -0.0096 7 6 2.7253 3.3809 1.1954 8 7 2.9593 4.0414 2.4036 9 6 3.4486 5.4223 2.4008 10 6 3.6178 5.8981 3.8206 11 1 3.3839 5.2381 4.6429 12 6 4.0703 7.1765 4.0700 13 7 4.3547 7.9803 3.0686 14 14 4.2794 7.7666 5.8299 15 1 3.8942 6.6797 6.7655 16 1 5.6980 8.1401 6.0615 17 1 3.4119 8.9494 6.0618 18 6 2.2622 2.0710 1.1964 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 2.0720 1.5648 -2.1325 25 1 2.9023 3.8813 -2.1401 26 1 3.3158 5.0501 -0.0138 27 1 2.7985 3.5855 3.2446 28 1 4.4084 5.4666 1.8862 29 1 2.7307 6.0610 1.8863 30 1 4.6734 8.8795 3.2441 31 1 2.0825 1.5618 2.1316 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034936548.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:46 Heat of formation + Delta-G solvation = -13.676683 kcal Electronic energy + Delta-G solvation = -12493.450063 eV Core-core repulsion = 10351.904418 eV Total energy + Delta-G solvation = -2141.545645 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.34799 -37.04838 -34.97185 -34.07953 -31.19027 -29.86967 -28.07369 -25.22357 -24.02637 -23.09104 -20.96902 -19.07741 -17.47261 -17.08323 -16.64777 -16.06331 -15.16316 -15.01400 -14.95593 -14.34995 -14.15600 -14.00596 -13.78487 -13.00800 -12.87321 -12.73725 -12.56413 -12.30526 -12.16254 -11.67700 -11.50847 -11.41203 -11.03600 -10.55015 -9.55161 -8.33264 -8.14315 -6.47620 0.60168 0.85728 1.39441 1.39973 1.53489 2.32481 2.90259 3.00989 3.06925 3.95972 4.10148 4.35107 4.43711 4.58956 4.64606 4.77227 4.79559 4.84731 5.04945 5.14402 5.22197 5.26246 5.29260 5.45637 5.51917 5.57775 5.74158 5.84414 5.89169 6.20136 6.47924 6.74535 7.14956 7.27205 8.79075 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.060931 B = 0.006241 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.427914 B = 4485.604163 C = 4850.489040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.037 4.037 4 C -0.193 4.193 5 C -0.071 4.071 6 C -0.236 4.236 7 C 0.204 3.796 8 N -0.738 5.738 9 C 0.274 3.726 10 C -0.558 4.558 11 H 0.071 0.929 12 C 0.008 3.992 13 N -0.927 5.927 14 Si 0.981 3.019 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.276 1.276 18 C -0.214 4.214 19 H 0.075 0.925 20 H 0.044 0.956 21 H 0.054 0.946 22 H 0.087 0.913 23 H 0.075 0.925 24 H 0.142 0.858 25 H 0.136 0.864 26 H 0.093 0.907 27 H 0.396 0.604 28 H -0.012 1.012 29 H -0.012 1.012 30 H 0.270 0.730 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 -13.358 -5.417 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.038 4.038 4 C -0.213 4.213 5 C -0.089 4.089 6 C -0.259 4.259 7 C 0.098 3.902 8 N -0.364 5.364 9 C 0.150 3.850 10 C -0.596 4.596 11 H 0.089 0.911 12 C -0.191 4.191 13 N -0.566 5.566 14 Si 0.804 3.196 15 H -0.185 1.185 16 H -0.201 1.201 17 H -0.201 1.201 18 C -0.237 4.237 19 H 0.094 0.906 20 H 0.063 0.937 21 H 0.073 0.927 22 H 0.106 0.894 23 H 0.093 0.907 24 H 0.160 0.840 25 H 0.154 0.846 26 H 0.112 0.888 27 H 0.230 0.770 28 H 0.006 0.994 29 H 0.006 0.994 30 H 0.078 0.922 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.187 -12.962 -5.460 14.991 hybrid contribution 0.327 0.923 1.062 1.444 sum -4.860 -12.039 -4.397 13.708 Atomic orbital electron populations 1.21715 0.94112 1.02435 1.01738 1.20584 0.96592 0.90919 1.03649 1.19940 0.95169 0.96693 0.91966 1.20968 1.06960 0.95196 0.98151 1.21079 0.96031 0.95094 0.96702 1.20763 1.11782 1.00667 0.92728 1.18352 0.92854 0.92222 0.86804 1.45142 1.71730 1.14614 1.04893 1.18528 0.91652 0.78212 0.96571 1.21621 1.46092 0.99524 0.92397 0.91135 1.25958 0.94159 0.96376 1.02656 1.70093 1.44853 1.08237 1.33431 0.85171 0.78001 0.78359 0.78062 1.18466 1.20107 1.20122 1.20583 1.10575 0.93367 0.99200 0.90606 0.93698 0.92670 0.89421 0.90681 0.84048 0.84641 0.88835 0.76979 0.99383 0.99393 0.92154 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.90 71.98 0.71 -1.89 16 2 C -0.08 -1.62 6.06 29.85 0.18 -1.44 16 3 C -0.04 -1.05 5.13 -19.88 -0.10 -1.15 16 4 C -0.19 -5.43 9.70 22.29 0.22 -5.21 16 5 C -0.07 -2.31 10.04 22.25 0.22 -2.08 16 6 C -0.24 -9.72 9.31 22.40 0.21 -9.52 16 7 C 0.20 8.44 6.65 38.21 0.25 8.70 16 8 N -0.74 -33.82 5.73 -343.15 -1.96 -35.78 16 9 C 0.27 15.05 4.67 85.63 0.40 15.45 16 10 C -0.56 -31.52 9.28 25.60 0.24 -31.28 16 11 H 0.07 3.76 7.60 -2.91 -0.02 3.74 16 12 C 0.01 0.46 5.46 84.66 0.46 0.92 16 13 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 14 Si 0.98 43.29 29.54 68.60 2.03 45.31 16 15 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 C -0.21 -7.27 9.55 22.40 0.21 -7.06 16 19 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 20 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 21 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 23 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 24 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 25 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 26 H 0.09 4.30 6.73 -2.91 -0.02 4.28 16 27 H 0.40 16.64 8.33 -92.71 -0.77 15.87 16 28 H -0.01 -0.70 7.95 -2.39 -0.02 -0.72 16 29 H -0.01 -0.70 7.95 -2.39 -0.02 -0.72 16 30 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -63.53 267.25 3.68 -59.84 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.33 Total: 20.34 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 3.01 Total: -34.55 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -1.68 Total: -90.94 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -63.53 3.68 -59.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034936548.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.166 kcal (2) G-P(sol) polarization free energy of solvation -63.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds