Wall clock time and date at job start Sun Mar 29 2020 21:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38601 * 119.54569 * 2 1 4 4 C 1.38626 * 119.36725 * 180.02562 * 3 2 1 5 5 C 1.38576 * 118.49939 * 0.28011 * 4 3 2 6 6 C 1.39375 * 119.05424 * 359.43008 * 5 4 3 7 7 C 1.48006 * 119.73376 * 180.29585 * 6 5 4 8 8 O 1.21569 * 119.99794 * 0.28164 * 7 6 5 9 9 N 1.34771 * 120.00639 * 180.27959 * 7 6 5 10 10 C 1.36783 * 120.00228 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00066 * 359.97438 * 10 9 7 12 12 C 1.39111 * 119.99771 * 180.02562 * 10 9 7 13 13 N 1.31321 * 120.00013 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00047 * 179.97438 * 12 10 9 15 15 H 1.48507 * 109.46990 * 59.99908 * 14 12 10 16 16 H 1.48497 * 109.47560 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.47339 * 300.00228 * 14 12 10 18 18 N 1.31504 * 119.54820 * 179.97438 * 2 1 3 19 19 H 1.09008 * 109.47155 * 89.99747 * 1 2 3 20 20 H 1.08997 * 109.47000 * 209.99722 * 1 2 3 21 21 H 1.08996 * 109.47287 * 329.99771 * 1 2 3 22 22 H 1.07992 * 120.31276 * 359.97438 * 3 2 1 23 23 H 1.08002 * 120.74583 * 179.97438 * 4 3 2 24 24 H 1.08001 * 120.47318 * 179.70219 * 5 4 3 25 25 H 0.97005 * 119.99593 * 0.02562 * 9 7 6 26 26 H 0.97008 * 119.99909 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1904 1.2058 0.0000 4 6 3.5767 1.2015 -0.0005 5 6 4.2341 -0.0184 -0.0070 6 6 3.4827 -1.1923 -0.0006 7 6 4.1694 -2.5034 -0.0008 8 8 5.3841 -2.5533 -0.0013 9 7 3.4483 -3.6419 -0.0003 10 6 4.0830 -4.8536 0.0001 11 1 5.1620 -4.8979 -0.0004 12 6 3.3385 -6.0287 0.0001 13 7 2.0264 -5.9748 0.0002 14 14 4.2052 -7.6834 -0.0001 15 1 5.0551 -7.7972 1.2124 16 1 3.1947 -8.7716 0.0005 17 1 5.0550 -7.7970 -1.2127 18 7 2.1555 -1.1440 0.0005 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5138 22 1 1.6481 2.1397 -0.0004 23 1 4.1317 2.1279 -0.0010 24 1 5.3133 -0.0590 -0.0125 25 1 2.4790 -3.6021 -0.0002 26 1 1.5073 -6.7942 -0.0003 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037714262.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:43 Heat of formation + Delta-G solvation = -34.031071 kcal Electronic energy + Delta-G solvation = -12618.185367 eV Core-core repulsion = 10274.498084 eV Total energy + Delta-G solvation = -2343.687283 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 206.080 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.38208 -39.59242 -36.17953 -33.87940 -33.74184 -32.90058 -28.64195 -27.45586 -25.07090 -23.00107 -21.45781 -20.11003 -18.53808 -17.35535 -16.74345 -16.63248 -15.96875 -15.75965 -15.32926 -14.88014 -14.45005 -13.94357 -13.58831 -13.22125 -13.02632 -12.93367 -12.74370 -12.53644 -12.13142 -11.61982 -10.92932 -10.83734 -10.27010 -10.18149 -9.86103 -8.59502 -6.05387 -0.19818 0.35546 1.39100 1.40032 1.52449 1.97315 2.23812 2.85236 2.94023 3.27024 3.39695 3.88535 4.14075 4.17157 4.23091 4.64447 4.71151 4.80628 4.85457 5.19528 5.21120 5.25979 5.30188 5.77943 5.87366 6.42795 6.90468 7.01389 7.41106 7.95102 8.57090 Molecular weight = 206.08amu Principal moments of inertia in cm(-1) A = 0.049003 B = 0.008466 C = 0.007247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.259389 B = 3306.450971 C = 3862.564323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.106 3.894 3 C -0.152 4.152 4 C -0.067 4.067 5 C -0.146 4.146 6 C 0.080 3.920 7 C 0.459 3.541 8 O -0.635 6.635 9 N -0.532 5.532 10 C -0.345 4.345 11 H 0.089 0.911 12 C -0.009 4.009 13 N -0.905 5.905 14 Si 1.007 2.993 15 H -0.267 1.267 16 H -0.264 1.264 17 H -0.266 1.266 18 N -0.502 5.502 19 H 0.088 0.912 20 H 0.061 0.939 21 H 0.110 0.890 22 H 0.185 0.815 23 H 0.182 0.818 24 H 0.135 0.865 25 H 0.403 0.597 26 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 12.696 -0.021 13.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.035 4.035 3 C -0.172 4.172 4 C -0.093 4.093 5 C -0.168 4.168 6 C -0.057 4.057 7 C 0.247 3.753 8 O -0.525 6.525 9 N -0.165 5.165 10 C -0.475 4.475 11 H 0.107 0.893 12 C -0.212 4.212 13 N -0.543 5.543 14 Si 0.829 3.171 15 H -0.191 1.191 16 H -0.189 1.189 17 H -0.191 1.191 18 N -0.216 5.216 19 H 0.107 0.893 20 H 0.080 0.920 21 H 0.129 0.871 22 H 0.202 0.798 23 H 0.199 0.801 24 H 0.153 0.847 25 H 0.238 0.762 26 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.511 11.665 -0.018 12.507 hybrid contribution 0.496 -0.337 -0.014 0.599 sum -4.015 11.329 -0.032 12.019 Atomic orbital electron populations 1.20819 0.86316 1.04417 1.04065 1.22104 0.98806 0.88145 0.94435 1.22562 0.94834 0.99878 0.99882 1.22008 0.95003 0.97803 0.94445 1.22151 1.01895 0.92513 1.00204 1.21141 0.90028 0.94128 1.00370 1.18172 0.86738 0.84306 0.86109 1.90527 1.14440 1.87405 1.60095 1.41895 1.10030 1.04771 1.59756 1.19913 0.93679 0.83374 1.50503 0.89329 1.26394 0.96183 1.03600 0.94975 1.69687 1.06070 1.31621 1.46958 0.84799 0.77834 0.75113 0.79403 1.19136 1.18855 1.19127 1.67452 1.08700 1.32352 1.13078 0.89333 0.91976 0.87100 0.79805 0.80063 0.84670 0.76196 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.14 10.17 71.23 0.72 -1.42 15 2 C 0.11 3.19 6.78 42.69 0.29 3.48 15 3 C -0.15 -3.41 9.75 22.45 0.22 -3.19 15 4 C -0.07 -1.66 10.17 22.44 0.23 -1.43 15 5 C -0.15 -5.31 9.63 22.62 0.22 -5.10 15 6 C 0.08 3.64 6.75 41.86 0.28 3.93 15 7 C 0.46 25.81 7.76 86.83 0.67 26.49 15 8 O -0.64 -38.86 15.89 -3.93 -0.06 -38.92 15 9 N -0.53 -31.27 5.26 -309.51 -1.63 -32.90 15 10 C -0.35 -20.87 9.68 84.13 0.81 -20.06 15 11 H 0.09 5.55 7.15 -2.91 -0.02 5.53 15 12 C -0.01 -0.52 5.50 84.98 0.47 -0.05 15 13 N -0.91 -50.96 13.05 21.69 0.28 -50.68 15 14 Si 1.01 43.36 29.55 68.60 2.03 45.39 15 15 H -0.27 -11.23 7.11 99.48 0.71 -10.53 15 16 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 18 N -0.50 -20.92 9.45 -173.11 -1.64 -22.55 15 19 H 0.09 1.70 8.14 -2.38 -0.02 1.68 15 20 H 0.06 1.56 8.14 -2.39 -0.02 1.55 15 21 H 0.11 1.50 8.08 -2.39 -0.02 1.48 15 22 H 0.18 2.21 8.06 -2.91 -0.02 2.19 15 23 H 0.18 2.71 8.06 -2.91 -0.02 2.69 15 24 H 0.14 4.99 7.64 -2.91 -0.02 4.96 15 25 H 0.40 23.41 7.22 -92.70 -0.67 22.74 15 26 H 0.29 14.71 8.31 -92.70 -0.77 13.94 15 Total: -1.00 -74.57 241.51 3.43 -71.14 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.53 Total: 25.88 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 3.92 Total: 2.65 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -2.98 Total: -106.13 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -0.06 Total: -38.92 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -74.57 3.43 -71.14 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037714262.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.107 kcal (2) G-P(sol) polarization free energy of solvation -74.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds