Wall clock time and date at job start Sun Mar 29 2020 21:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31330 * 1 3 3 Si 1.86800 * 120.00219 * 2 1 4 4 H 1.48498 * 109.47295 * 240.00339 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47035 * 119.99738 * 3 2 1 7 7 C 1.38942 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00097 * 180.27823 * 7 2 1 9 9 N 1.37565 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.37289 * 126.51302 * 359.69368 * 9 7 2 11 11 C 1.34639 * 106.83018 * 179.84130 * 10 9 7 12 12 N 1.34244 * 108.27654 * 0.42034 * 11 10 9 13 13 C 1.30479 * 109.40427 * 359.73437 * 12 11 10 14 14 C 1.50706 * 125.74472 * 179.97438 * 13 12 11 15 15 F 1.39902 * 109.46938 * 15.00029 * 14 13 12 16 16 F 1.39899 * 109.47208 * 134.99677 * 14 13 12 17 17 F 1.39891 * 109.47053 * 254.99732 * 14 13 12 18 18 H 0.96996 * 119.99749 * 359.97438 * 1 2 3 19 19 H 1.08003 * 126.58507 * 359.97438 * 10 9 7 20 20 H 1.08004 * 125.86002 * 180.13223 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 3.1011 1.6964 -1.2125 5 1 1.2823 2.7464 0.0006 6 1 3.1011 1.6963 1.2125 7 6 2.0080 -1.2033 -0.0005 8 1 3.0880 -1.2033 0.0040 9 7 1.3202 -2.3946 -0.0005 10 6 -0.0439 -2.5503 0.0059 11 6 -0.2851 -3.8749 -0.0003 12 7 0.8936 -4.5174 -0.0009 13 6 1.8633 -3.6444 -0.0010 14 6 3.3360 -3.9643 -0.0010 15 9 3.5212 -5.3083 -0.3423 16 9 3.9897 -3.1520 -0.9338 17 9 3.8642 -3.7296 1.2729 18 1 -0.4849 0.8400 0.0004 19 1 -0.7817 -1.7616 0.0122 20 1 -1.2596 -4.3405 0.0002 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039270033.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:07 Heat of formation + Delta-G solvation = -99.711528 kcal Electronic energy + Delta-G solvation = -13618.999353 eV Core-core repulsion = 10594.774117 eV Total energy + Delta-G solvation = -3024.225236 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 206.036 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.35610 -46.88678 -46.86747 -40.60430 -34.29723 -31.19773 -29.24664 -25.82930 -24.57914 -20.60446 -20.02689 -18.67284 -17.76832 -17.39868 -16.40608 -15.13685 -14.39115 -14.03055 -13.73446 -13.52803 -13.32623 -13.07598 -13.04703 -12.82827 -12.47378 -12.01876 -11.47066 -11.44682 -10.96807 -10.75276 -9.99016 -8.84030 -8.66926 -7.35304 -6.98180 -4.79419 2.78695 2.90386 2.94771 3.29504 3.33903 3.64658 4.18370 4.35434 4.62759 4.70512 5.31112 5.35235 6.33983 6.57412 6.76387 7.15804 7.30007 7.88893 8.13781 8.47145 8.98326 9.27998 9.95975 Molecular weight = 206.04amu Principal moments of inertia in cm(-1) A = 0.037732 B = 0.014955 C = 0.011476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.902809 B = 1871.895431 C = 2439.312383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.046 3.954 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.333 4.333 8 H 0.117 0.883 9 N -0.228 5.228 10 C -0.042 4.042 11 C -0.080 4.080 12 N -0.472 5.472 13 C -0.019 4.019 14 C 0.574 3.426 15 F -0.170 7.170 16 F -0.179 7.179 17 F -0.182 7.182 18 H 0.286 0.714 19 H 0.204 0.796 20 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.923 0.671 -0.021 2.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.165 4.165 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.464 4.464 8 H 0.135 0.865 9 N 0.107 4.893 10 C -0.187 4.187 11 C -0.236 4.236 12 N -0.194 5.194 13 C -0.270 4.270 14 C 0.518 3.482 15 F -0.152 7.152 16 F -0.160 7.160 17 F -0.164 7.164 18 H 0.097 0.903 19 H 0.220 0.780 20 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.099 0.085 -0.025 3.100 hybrid contribution 0.333 1.541 0.007 1.576 sum 3.432 1.625 -0.019 3.797 Atomic orbital electron populations 1.69671 1.06625 1.29464 1.40360 1.25639 0.95854 1.01142 0.93880 0.85562 0.79008 0.77837 0.80061 1.18683 1.19785 1.18722 1.20283 0.93359 0.81336 1.51395 0.86507 1.41499 1.06078 1.04327 1.37383 1.23852 0.84900 0.98643 1.11323 1.21985 0.95429 0.91432 1.14772 1.69664 0.97982 1.32323 1.19449 1.21796 0.92772 0.83672 1.28762 1.16536 0.84558 0.73762 0.73332 1.93141 1.95838 1.34052 1.92156 1.93165 1.83203 1.73359 1.66273 1.93171 1.88160 1.94287 1.40745 0.90304 0.77998 0.82742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.14 10.19 55.49 0.57 -19.58 14 2 C 0.05 1.11 5.48 -17.51 -0.10 1.01 14 3 Si 0.95 18.14 29.55 -169.99 -5.02 13.12 14 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 14 6 H -0.26 -4.94 7.11 56.52 0.40 -4.54 14 7 C -0.33 -8.59 9.67 -14.72 -0.14 -8.73 14 8 H 0.12 2.88 6.66 -52.49 -0.35 2.53 14 9 N -0.23 -6.10 2.93 -58.87 -0.17 -6.27 14 10 C -0.04 -1.07 10.40 -16.38 -0.17 -1.24 14 11 C -0.08 -1.95 11.85 -17.77 -0.21 -2.16 14 12 N -0.47 -12.28 11.05 -10.52 -0.12 -12.39 14 13 C -0.02 -0.49 7.23 -154.30 -1.12 -1.61 14 14 C 0.57 13.17 3.23 36.01 0.12 13.29 14 15 F -0.17 -3.70 17.16 2.25 0.04 -3.67 14 16 F -0.18 -3.95 15.83 2.25 0.04 -3.91 14 17 F -0.18 -4.02 17.30 2.25 0.04 -3.98 14 18 H 0.29 6.30 8.31 -40.82 -0.34 5.96 14 19 H 0.20 5.08 5.59 -52.48 -0.29 4.79 14 20 H 0.16 3.14 8.06 -52.48 -0.42 2.72 14 LS Contribution 201.80 15.07 3.04 3.04 Total: -1.00 -27.36 201.80 -3.41 -30.77 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -0.20 Total: 2.30 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -1.62 Total: 0.56 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.28 Total: -38.24 kcal Atomic # 9 Polarization: -11.67 SS G_CDS: 0.11 Total: -11.56 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.02 Total: 13.12 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -27.36 -3.41 -30.77 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039270033.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.941 kcal (2) G-P(sol) polarization free energy of solvation -27.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds