Wall clock time and date at job start Sun Mar 29 2020 21:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38284 * 119.98068 * 264.71832 * 10 9 7 12 12 C 1.38213 * 120.14049 * 179.68356 * 11 10 9 13 13 C 1.38287 * 120.14124 * 0.64927 * 12 11 10 14 14 C 1.38502 * 120.02799 * 359.64033 * 13 12 11 15 15 C 1.38494 * 119.98758 * 85.00095 * 10 9 7 16 16 O 1.36504 * 131.54345 * 0.02562 * 15 10 9 17 17 C 1.43980 * 105.48949 * 162.68438 * 16 15 10 18 18 O 1.36497 * 131.53910 * 180.02562 * 14 13 12 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.07998 * 119.93152 * 0.02743 * 11 10 9 23 23 H 1.08001 * 119.93290 * 180.29180 * 12 11 10 24 24 H 1.07996 * 119.98126 * 179.65500 * 13 12 11 25 25 H 1.09005 * 110.56958 * 268.56300 * 17 16 15 26 26 H 1.09003 * 110.70080 * 145.75446 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5956 -4.2362 -1.2057 12 6 3.4984 -5.2827 -1.2147 13 6 4.0300 -5.7514 -0.0273 14 6 3.6640 -5.1676 1.1742 15 6 2.7594 -4.1082 1.1826 16 8 2.5636 -3.7122 2.4742 17 6 3.0404 -4.8011 3.2866 18 8 4.0349 -5.4346 2.4604 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.1788 -3.8761 -2.1347 23 1 3.7850 -5.7391 -2.1507 24 1 4.7310 -6.5728 -0.0369 25 1 2.2302 -5.4951 3.5108 26 1 3.4888 -4.4274 4.2072 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000141398478.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:53 Heat of formation + Delta-G solvation = -44.255770 kcal Electronic energy + Delta-G solvation = -12973.051812 eV Core-core repulsion = 10596.628402 eV Total energy + Delta-G solvation = -2376.423410 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 206.073 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.59153 -37.43617 -35.76924 -33.30642 -31.07015 -29.38667 -27.02467 -25.35720 -23.39669 -22.29747 -20.68301 -17.46960 -17.13620 -16.56734 -16.19584 -15.74877 -14.51586 -14.03709 -13.72986 -13.32805 -12.74445 -12.63716 -12.42304 -11.95288 -11.73973 -11.17007 -11.04487 -10.53151 -10.51473 -10.43291 -9.57857 -9.45879 -8.40275 -7.90972 -7.51268 -6.02396 -4.05619 1.72845 1.88318 3.28842 3.34255 3.37549 3.41592 3.97642 4.19813 4.48421 5.02117 5.07589 5.21244 5.32713 5.49597 5.64361 5.77542 5.93093 6.12774 6.60587 6.70595 6.83625 6.93286 7.11527 7.50870 7.72162 7.74787 7.92547 8.31364 8.97615 9.57384 11.07803 Molecular weight = 206.07amu Principal moments of inertia in cm(-1) A = 0.038425 B = 0.010050 C = 0.008991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.518809 B = 2785.350225 C = 3113.504126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.056 0.944 9 C 0.052 3.948 10 C -0.019 4.019 11 C -0.115 4.115 12 C -0.116 4.116 13 C -0.129 4.129 14 C 0.020 3.980 15 C 0.031 3.969 16 O -0.294 6.294 17 C 0.210 3.790 18 O -0.319 6.319 19 H 0.263 0.737 20 H 0.032 0.968 21 H 0.033 0.967 22 H 0.133 0.867 23 H 0.128 0.872 24 H 0.123 0.877 25 H 0.074 0.926 26 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.177 -9.982 1.523 11.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.019 4.019 11 C -0.133 4.133 12 C -0.134 4.134 13 C -0.147 4.147 14 C -0.024 4.024 15 C -0.013 4.013 16 O -0.209 6.209 17 C 0.097 3.903 18 O -0.236 6.236 19 H 0.072 0.928 20 H 0.050 0.950 21 H 0.051 0.949 22 H 0.151 0.849 23 H 0.146 0.854 24 H 0.141 0.859 25 H 0.092 0.908 26 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.106 -9.776 1.726 11.163 hybrid contribution 0.466 0.906 0.338 1.073 sum 5.572 -8.870 2.063 10.677 Atomic orbital electron populations 1.69947 1.06016 1.26919 1.50509 1.24982 0.94891 0.99205 0.95130 0.86581 0.79539 0.82736 0.78750 1.20119 1.21184 1.20180 1.20970 0.92939 0.89773 1.51061 0.92617 1.18307 0.92354 0.89174 0.98686 1.19851 0.97073 0.96884 0.88140 1.20918 0.98683 0.96387 0.97328 1.20813 0.98185 0.97791 0.96599 1.19798 1.04299 1.02030 0.88618 1.19831 0.98603 0.98140 0.85824 1.19644 0.99762 0.95847 0.86031 1.87482 1.80830 1.38673 1.13951 1.25507 0.88083 0.84205 0.92493 1.87256 1.48405 1.73744 1.14181 0.92786 0.94960 0.94872 0.84887 0.85388 0.85897 0.90799 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.51 -14.69 9.09 -34.44 -0.31 -15.00 15 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 15 9 C 0.05 1.36 5.10 -29.03 -0.15 1.22 15 10 C -0.02 -0.42 5.08 -104.51 -0.53 -0.95 15 11 C -0.11 -2.17 9.67 -39.57 -0.38 -2.55 15 12 C -0.12 -1.83 10.04 -39.57 -0.40 -2.23 15 13 C -0.13 -2.11 10.06 -39.47 -0.40 -2.51 15 14 C 0.02 0.38 7.15 -39.08 -0.28 0.10 15 15 C 0.03 0.68 6.83 -39.09 -0.27 0.41 15 16 O -0.29 -6.28 11.39 -45.70 -0.52 -6.80 15 17 C 0.21 3.26 8.89 101.05 0.90 4.16 15 18 O -0.32 -5.63 11.40 -45.68 -0.52 -6.15 15 19 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 20 H 0.03 0.92 8.12 -51.93 -0.42 0.50 15 21 H 0.03 0.89 8.05 -51.93 -0.42 0.47 15 22 H 0.13 2.31 8.06 -52.49 -0.42 1.89 15 23 H 0.13 1.55 8.06 -52.49 -0.42 1.12 15 24 H 0.12 1.65 8.06 -52.49 -0.42 1.23 15 25 H 0.07 0.97 8.14 -51.93 -0.42 0.54 15 26 H 0.12 1.48 8.14 -51.93 -0.42 1.05 15 LS Contribution 236.99 15.07 3.57 3.57 Total: -1.00 -31.99 236.99 -6.16 -38.16 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: -2.49 Total: -3.95 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -1.91 Total: -15.74 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -1.04 Total: -12.94 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.99 -6.16 -38.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000141398478.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.099 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds