Wall clock time and date at job start Sun Mar 29 2020 21:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47030 * 20.98104 * 3 2 1 5 5 C 1.36937 * 120.00286 * 263.92289 * 4 3 2 6 6 H 1.08001 * 119.99857 * 199.18674 * 5 4 3 7 7 C 1.38809 * 120.00130 * 19.18790 * 5 4 3 8 8 N 1.31618 * 119.99775 * 22.45448 * 7 5 4 9 9 Si 1.86799 * 120.00155 * 202.45260 * 7 5 4 10 10 H 1.48496 * 109.47101 * 89.99844 * 9 7 5 11 11 H 1.48501 * 109.47220 * 210.00084 * 9 7 5 12 12 H 1.48498 * 109.47034 * 330.00127 * 9 7 5 13 13 C 1.46501 * 119.99454 * 83.92727 * 4 3 2 14 14 H 1.08994 * 109.36088 * 359.72224 * 13 4 3 15 15 C 1.50072 * 109.35590 * 239.99359 * 13 4 3 16 16 C 1.29444 * 124.07784 * 222.63915 * 15 13 4 17 17 C 1.50063 * 124.07364 * 0.49378 * 16 15 13 18 18 C 1.53022 * 110.14933 * 342.86781 * 17 16 15 19 19 C 1.53029 * 109.35879 * 119.31219 * 13 4 3 20 20 H 4.40640 * 5.51372 * 180.02562 * 4 1 2 21 21 H 1.08992 * 109.47209 * 140.98837 * 3 2 1 22 22 H 1.09005 * 109.46931 * 260.98738 * 3 2 1 23 23 H 0.97003 * 120.00250 * 180.02562 * 8 7 5 24 24 H 1.07999 * 117.95832 * 42.66411 * 15 13 4 25 25 H 1.07996 * 117.95796 * 180.52009 * 16 15 13 26 26 H 1.09002 * 109.35684 * 103.07647 * 17 16 15 27 27 H 1.09001 * 109.35996 * 222.79808 * 17 16 15 28 28 H 1.08999 * 109.64128 * 169.11915 * 18 17 16 29 29 H 1.08996 * 109.64390 * 289.75407 * 18 17 16 30 30 H 1.09002 * 109.63722 * 289.32055 * 19 13 4 31 31 H 1.08994 * 109.64441 * 49.95390 * 19 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2887 -0.4945 5 6 3.4819 -2.2745 0.3903 6 1 4.1181 -3.0870 0.0714 7 6 3.0161 -2.2296 1.6971 8 7 1.9317 -1.5419 1.9859 9 14 3.9283 -3.1452 3.0458 10 1 4.9538 -2.2529 3.6436 11 1 2.9665 -3.5669 4.0957 12 1 4.5899 -4.3437 2.4704 13 6 3.2526 -1.5234 -1.9358 14 1 2.9284 -0.6331 -2.4746 15 6 2.3832 -2.6836 -2.3235 16 6 2.7443 -3.6188 -3.1425 17 6 4.0866 -3.6791 -3.8106 18 6 4.7751 -2.3146 -3.7345 19 6 4.7130 -1.8198 -2.2840 20 1 -1.0498 -0.0003 -0.0003 21 1 3.0090 0.7993 -0.6468 22 1 3.0093 0.1618 1.0150 23 1 1.6063 -1.5102 2.8992 24 1 1.3946 -2.7417 -1.8926 25 1 2.0352 -4.4041 -3.3586 26 1 4.7056 -4.4244 -3.3111 27 1 3.9576 -3.9586 -4.8562 28 1 5.8156 -2.4114 -4.0443 29 1 4.2602 -1.6076 -4.3848 30 1 5.3058 -0.9109 -2.1813 31 1 5.0995 -2.5904 -1.6170 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306222661.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:37 Heat of formation + Delta-G solvation = 89.452199 kcal Electronic energy + Delta-G solvation = -13400.817149 eV Core-core repulsion = 11263.743508 eV Total energy + Delta-G solvation = -2137.073641 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.14997 -35.16244 -31.51096 -31.21273 -30.33255 -28.29435 -25.89185 -23.56449 -21.57228 -20.84231 -17.80536 -16.79894 -16.21432 -15.47548 -14.80556 -13.87744 -13.55780 -13.33474 -13.08430 -12.31858 -12.09979 -11.98413 -11.61308 -11.28239 -11.12602 -10.77087 -10.48576 -10.18926 -10.05098 -9.84942 -9.57432 -8.87277 -8.68202 -8.45428 -8.26206 -6.90959 -5.73756 -3.15566 3.06159 3.39927 3.47725 3.48407 4.22278 4.42025 4.58042 5.30781 5.37470 5.39974 5.46267 5.75474 5.86272 6.00957 6.06069 6.15750 6.19174 6.31460 6.33189 6.44174 6.58467 6.70508 7.03049 7.06854 7.23756 7.42909 7.44953 7.69791 7.84837 8.35291 9.15772 9.23783 9.83018 10.30043 11.29841 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.027205 B = 0.013398 C = 0.010463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.992162 B = 2089.408451 C = 2675.519597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 C -0.095 4.095 3 C 0.268 3.732 4 N -0.580 5.580 5 C -0.255 4.255 6 H 0.075 0.925 7 C 0.002 3.998 8 N -0.889 5.889 9 Si 0.897 3.103 10 H -0.288 1.288 11 H -0.294 1.294 12 H -0.280 1.280 13 C 0.198 3.802 14 H 0.061 0.939 15 C -0.114 4.114 16 C -0.194 4.194 17 C -0.080 4.080 18 C -0.117 4.117 19 C -0.125 4.125 20 H 0.189 0.811 21 H 0.037 0.963 22 H 0.093 0.907 23 H 0.253 0.747 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.244 0.412 -8.232 8.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.322 4.322 2 C -0.098 4.098 3 C 0.142 3.858 4 N -0.299 5.299 5 C -0.384 4.384 6 H 0.093 0.907 7 C -0.197 4.197 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.215 1.215 11 H -0.220 1.220 12 H -0.206 1.206 13 C 0.091 3.909 14 H 0.079 0.921 15 C -0.134 4.134 16 C -0.214 4.214 17 C -0.117 4.117 18 C -0.156 4.156 19 C -0.164 4.164 20 H 0.206 0.794 21 H 0.055 0.945 22 H 0.111 0.889 23 H 0.063 0.937 24 H 0.114 0.886 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.196 0.427 -8.043 8.666 hybrid contribution -0.203 -0.807 1.007 1.306 sum 2.993 -0.380 -7.037 7.656 Atomic orbital electron populations 1.24155 0.95326 1.05580 1.07124 1.24345 0.95354 0.95470 0.94648 1.17805 0.82827 0.85839 0.99296 1.44212 1.74617 1.11687 0.99380 1.19110 1.23994 1.04877 0.90411 0.90731 1.24914 0.96178 0.99857 0.98726 1.70137 1.19519 1.44991 1.18533 0.86370 0.79313 0.79393 0.82245 1.21492 1.22041 1.20581 1.19300 0.92036 0.94008 0.85594 0.92104 1.22831 1.00005 0.96561 0.93968 1.21791 0.97560 0.99841 1.02172 1.20313 0.94843 0.97531 0.99000 1.21611 0.99332 0.96688 0.97923 1.21991 0.98433 1.01157 0.94795 0.79386 0.94504 0.88888 0.93670 0.88558 0.89404 0.91858 0.92511 0.92643 0.92456 0.92544 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.03 19.25 29.55 0.57 -6.46 16 2 C -0.10 -2.34 11.51 -37.12 -0.43 -2.77 16 3 C 0.27 6.35 5.34 -6.83 -0.04 6.31 16 4 N -0.58 -14.04 2.41 -170.63 -0.41 -14.45 16 5 C -0.25 -6.78 8.59 -15.06 -0.13 -6.91 16 6 H 0.07 1.99 6.83 -52.49 -0.36 1.64 16 7 C 0.00 0.06 4.82 -17.43 -0.08 -0.02 16 8 N -0.89 -25.37 9.61 55.49 0.53 -24.84 16 9 Si 0.90 21.69 29.61 -169.99 -5.03 16.66 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 13 C 0.20 4.07 2.86 -69.37 -0.20 3.87 16 14 H 0.06 1.20 7.87 -51.93 -0.41 0.79 16 15 C -0.11 -2.34 8.77 -35.90 -0.31 -2.66 16 16 C -0.19 -3.47 9.80 -35.90 -0.35 -3.82 16 17 C -0.08 -1.21 6.11 -28.18 -0.17 -1.38 16 18 C -0.12 -1.74 6.01 -26.52 -0.16 -1.90 16 19 C -0.12 -2.24 5.41 -26.52 -0.14 -2.39 16 20 H 0.19 3.69 7.80 -54.10 -0.42 3.27 16 21 H 0.04 0.76 8.05 -51.93 -0.42 0.34 16 22 H 0.09 2.39 6.58 -51.93 -0.34 2.05 16 23 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 25 H 0.09 1.47 8.06 -52.49 -0.42 1.04 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.41 6.70 -51.93 -0.35 1.06 16 LS Contribution 260.38 15.07 3.92 3.92 Total: -1.00 -28.83 260.38 -6.83 -35.66 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -4.39 Total: 1.17 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -1.45 Total: -18.12 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.12 Total: -39.28 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.83 -6.83 -35.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306222661.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.107 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds