Wall clock time and date at job start Sun Mar 29 2020 21:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47030 * 20.98104 * 3 2 1 5 5 C 1.36937 * 120.00286 * 263.92289 * 4 3 2 6 6 H 1.08001 * 119.99857 * 199.18674 * 5 4 3 7 7 C 1.38809 * 120.00130 * 19.18790 * 5 4 3 8 8 N 1.31618 * 119.99775 * 22.45448 * 7 5 4 9 9 Si 1.86799 * 120.00155 * 202.45260 * 7 5 4 10 10 H 1.48496 * 109.47101 * 89.99844 * 9 7 5 11 11 H 1.48501 * 109.47220 * 210.00084 * 9 7 5 12 12 H 1.48498 * 109.47034 * 330.00127 * 9 7 5 13 13 C 1.46501 * 119.99454 * 83.92727 * 4 3 2 14 14 H 1.08994 * 109.36088 * 359.72224 * 13 4 3 15 15 C 1.50072 * 109.35590 * 239.99359 * 13 4 3 16 16 C 1.29444 * 124.07784 * 222.63915 * 15 13 4 17 17 C 1.50063 * 124.07364 * 0.49378 * 16 15 13 18 18 C 1.53022 * 110.14933 * 342.86781 * 17 16 15 19 19 C 1.53029 * 109.35879 * 119.31219 * 13 4 3 20 20 H 4.40640 * 5.51372 * 180.02562 * 4 1 2 21 21 H 1.08992 * 109.47209 * 140.98837 * 3 2 1 22 22 H 1.09005 * 109.46931 * 260.98738 * 3 2 1 23 23 H 0.97003 * 120.00250 * 180.02562 * 8 7 5 24 24 H 1.07999 * 117.95832 * 42.66411 * 15 13 4 25 25 H 1.07996 * 117.95796 * 180.52009 * 16 15 13 26 26 H 1.09002 * 109.35684 * 103.07647 * 17 16 15 27 27 H 1.09001 * 109.35996 * 222.79808 * 17 16 15 28 28 H 1.08999 * 109.64128 * 169.11915 * 18 17 16 29 29 H 1.08996 * 109.64390 * 289.75407 * 18 17 16 30 30 H 1.09002 * 109.63722 * 289.32055 * 19 13 4 31 31 H 1.08994 * 109.64441 * 49.95390 * 19 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2887 -0.4945 5 6 3.4819 -2.2745 0.3903 6 1 4.1181 -3.0870 0.0714 7 6 3.0161 -2.2296 1.6971 8 7 1.9317 -1.5419 1.9859 9 14 3.9283 -3.1452 3.0458 10 1 4.9538 -2.2529 3.6436 11 1 2.9665 -3.5669 4.0957 12 1 4.5899 -4.3437 2.4704 13 6 3.2526 -1.5234 -1.9358 14 1 2.9284 -0.6331 -2.4746 15 6 2.3832 -2.6836 -2.3235 16 6 2.7443 -3.6188 -3.1425 17 6 4.0866 -3.6791 -3.8106 18 6 4.7751 -2.3146 -3.7345 19 6 4.7130 -1.8198 -2.2840 20 1 -1.0498 -0.0003 -0.0003 21 1 3.0090 0.7993 -0.6468 22 1 3.0093 0.1618 1.0150 23 1 1.6063 -1.5102 2.8992 24 1 1.3946 -2.7417 -1.8926 25 1 2.0352 -4.4041 -3.3586 26 1 4.7056 -4.4244 -3.3111 27 1 3.9576 -3.9586 -4.8562 28 1 5.8156 -2.4114 -4.0443 29 1 4.2602 -1.6076 -4.3848 30 1 5.3058 -0.9109 -2.1813 31 1 5.0995 -2.5904 -1.6170 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306222661.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:29:37 Heat of formation + Delta-G solvation = 74.520589 kcal Electronic energy + Delta-G solvation = -13401.464632 eV Core-core repulsion = 11263.743508 eV Total energy + Delta-G solvation = -2137.721124 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.68507 -36.89898 -33.46901 -32.99105 -31.74212 -29.91677 -27.84961 -25.27159 -22.92431 -22.55259 -19.58283 -18.46131 -17.91171 -17.27670 -16.45716 -15.63571 -15.33884 -15.02122 -14.58209 -13.88978 -13.63606 -13.40869 -13.33548 -12.99358 -12.79480 -12.66352 -12.26990 -12.01631 -11.67494 -11.33097 -11.12037 -10.70644 -10.60394 -10.32740 -9.81515 -8.83090 -7.79568 -5.21399 1.46543 1.48445 1.53544 1.56901 2.35774 2.52597 2.61160 3.31268 3.78393 4.00342 4.09362 4.13413 4.33280 4.57899 4.66075 4.70771 4.80448 4.87267 5.01675 5.12364 5.17938 5.26074 5.28974 5.56024 5.61631 5.69093 5.73096 5.91805 6.19126 6.36652 7.14787 7.35977 7.88294 8.31398 9.21979 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.027205 B = 0.013398 C = 0.010463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.992162 B = 2089.408451 C = 2675.519597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 C -0.130 4.130 3 C 0.267 3.733 4 N -0.592 5.592 5 C -0.248 4.248 6 H 0.071 0.929 7 C -0.050 4.050 8 N -0.916 5.916 9 Si 0.955 3.045 10 H -0.285 1.285 11 H -0.303 1.303 12 H -0.274 1.274 13 C 0.194 3.806 14 H 0.065 0.935 15 C -0.150 4.150 16 C -0.168 4.168 17 C -0.082 4.082 18 C -0.110 4.110 19 C -0.118 4.118 20 H 0.219 0.781 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.244 0.756 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.356 -0.220 -9.979 10.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 C -0.133 4.133 3 C 0.142 3.858 4 N -0.311 5.311 5 C -0.378 4.378 6 H 0.088 0.912 7 C -0.245 4.245 8 N -0.561 5.561 9 Si 0.784 3.216 10 H -0.212 1.212 11 H -0.231 1.231 12 H -0.199 1.199 13 C 0.089 3.911 14 H 0.083 0.917 15 C -0.171 4.171 16 C -0.187 4.187 17 C -0.119 4.119 18 C -0.148 4.148 19 C -0.157 4.157 20 H 0.236 0.764 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.117 0.883 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.328 -0.210 -9.824 10.737 hybrid contribution -0.578 -0.642 1.443 1.682 sum 3.750 -0.852 -8.381 9.221 Atomic orbital electron populations 1.24958 0.96377 1.04541 1.05977 1.24772 0.96244 0.96515 0.95725 1.17789 0.82738 0.86689 0.98572 1.44409 1.74549 1.11347 1.00839 1.19263 1.22822 1.04782 0.90932 0.91170 1.25540 0.97031 1.01464 1.00515 1.70295 1.20884 1.46940 1.17978 0.85452 0.77939 0.78522 0.79658 1.21207 1.23059 1.19895 1.19488 0.93780 0.94344 0.83510 0.91667 1.22573 0.98937 0.98705 0.96839 1.22148 0.98963 0.98018 0.99596 1.20434 0.92840 0.98006 1.00586 1.21598 1.01250 0.96509 0.95484 1.21889 0.96116 1.00925 0.96759 0.76434 0.91613 0.91485 0.94658 0.92290 0.88340 0.91231 0.89225 0.89861 0.91376 0.91834 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.91 19.25 74.32 1.43 -12.48 16 2 C -0.13 -6.46 11.51 31.13 0.36 -6.10 16 3 C 0.27 12.88 5.34 84.58 0.45 13.33 16 4 N -0.59 -28.92 2.41 -693.75 -1.67 -30.59 16 5 C -0.25 -13.33 8.59 84.03 0.72 -12.61 16 6 H 0.07 3.77 6.83 -2.91 -0.02 3.75 16 7 C -0.05 -2.76 4.82 84.86 0.41 -2.35 16 8 N -0.92 -53.55 9.61 21.65 0.21 -53.34 16 9 Si 0.95 45.30 29.61 68.60 2.03 47.33 16 10 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 11 H -0.30 -14.75 7.11 99.48 0.71 -14.05 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 C 0.19 7.91 2.86 44.06 0.13 8.03 16 14 H 0.07 2.53 7.87 -2.39 -0.02 2.51 16 15 C -0.15 -6.17 8.77 27.04 0.24 -5.93 16 16 C -0.17 -5.64 9.80 27.03 0.27 -5.38 16 17 C -0.08 -2.15 6.11 29.66 0.18 -1.97 16 18 C -0.11 -2.85 6.01 30.73 0.18 -2.67 16 19 C -0.12 -4.02 5.41 30.73 0.17 -3.85 16 20 H 0.22 8.31 7.80 -4.43 -0.03 8.28 16 21 H 0.07 2.70 8.05 -2.39 -0.02 2.68 16 22 H 0.07 3.55 6.58 -2.38 -0.02 3.54 16 23 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 24 H 0.06 2.81 8.06 -2.91 -0.02 2.79 16 25 H 0.10 3.07 8.06 -2.91 -0.02 3.04 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 30 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.05 1.87 6.70 -2.39 -0.02 1.86 16 Total: -1.00 -62.34 260.38 6.18 -56.16 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.08 Total: 12.42 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.53 Total: -31.98 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -1.46 Total: -83.93 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -62.34 6.18 -56.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306222661.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.680 kcal (2) G-P(sol) polarization free energy of solvation -62.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds