Wall clock time and date at job start Sun Mar 29 2020 21:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.31624 * 117.84490 * 54.63295 * 3 2 1 5 5 C 1.50355 * 123.36400 * 180.78112 * 4 3 2 6 6 N 1.46985 * 109.15154 * 348.97092 * 5 4 3 7 7 C 1.34784 * 121.32077 * 223.31223 * 6 5 4 8 8 O 1.21682 * 119.99954 * 179.97438 * 7 6 5 9 9 C 1.46368 * 119.99916 * 359.72761 * 7 6 5 10 10 H 1.07998 * 120.00437 * 359.97438 * 9 7 6 11 11 C 1.40055 * 119.99853 * 179.97438 * 9 7 6 12 12 N 1.30662 * 119.99894 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 119.99877 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47029 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47165 * 120.00059 * 13 11 9 16 16 H 1.48495 * 109.46978 * 240.00192 * 13 11 9 17 17 C 1.47295 * 117.35422 * 43.58274 * 6 5 4 18 18 C 1.49999 * 117.84230 * 234.61440 * 3 2 1 19 19 H 1.07996 * 118.31616 * 0.81526 * 4 3 2 20 20 H 1.08997 * 109.52269 * 229.06423 * 5 4 3 21 21 H 1.08998 * 109.52145 * 108.87189 * 5 4 3 22 22 H 0.97000 * 120.00244 * 179.97438 * 12 11 9 23 23 H 1.09001 * 109.75993 * 56.95965 * 17 6 5 24 24 H 1.08997 * 109.76278 * 177.71444 * 17 6 5 25 25 H 1.08991 * 109.31658 * 281.30202 * 18 3 2 26 26 H 1.08999 * 109.31068 * 40.73048 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.1831 -0.6727 -0.9491 5 6 4.6796 -0.7697 -1.0571 6 7 5.2933 0.1936 -0.1320 7 6 6.3417 0.9537 -0.5059 8 8 6.8309 1.7440 0.2794 9 6 6.8951 0.8247 -1.8548 10 1 6.4637 0.1201 -2.5504 11 6 7.9841 1.6149 -2.2434 12 7 8.5058 2.4677 -1.4020 13 14 8.6909 1.4498 -3.9647 14 1 7.9273 0.4218 -4.7168 15 1 8.5916 2.7539 -4.6678 16 1 10.1160 1.0416 -3.8775 17 6 4.7210 0.2909 1.2217 18 6 3.2682 0.7690 1.0813 19 1 2.5820 -1.1811 -1.6883 20 1 4.9867 -0.5413 -2.0777 21 1 4.9989 -1.7789 -0.7969 22 1 9.2603 3.0148 -1.6710 23 1 4.7454 -0.6867 1.7032 24 1 5.2915 1.0076 1.8124 25 1 3.2579 1.8304 0.8339 26 1 2.7473 0.6169 2.0267 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306729269.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:03 Heat of formation + Delta-G solvation = -13.037860 kcal Electronic energy + Delta-G solvation = -12794.622918 eV Core-core repulsion = 10451.845969 eV Total energy + Delta-G solvation = -2342.776949 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 206.080 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.34322 -38.38069 -36.94241 -34.61882 -33.55200 -32.08990 -28.58144 -26.74553 -24.53653 -22.07748 -20.65333 -19.03045 -17.76139 -16.82823 -16.44341 -15.87168 -15.77438 -15.16947 -14.80900 -14.46803 -14.28439 -13.82855 -13.64002 -13.31081 -13.09087 -12.97717 -12.66722 -12.58534 -12.14833 -11.88052 -11.73877 -10.89410 -10.00977 -9.71431 -9.08508 -8.23022 -6.77250 0.38805 1.45571 1.46986 1.63454 1.64440 2.28464 2.36644 2.52639 2.77667 2.98976 3.69522 3.87024 4.17341 4.31477 4.47530 4.58962 4.82292 4.89819 4.98348 5.10711 5.30834 5.43004 5.57516 5.82728 6.18384 6.43584 6.48045 6.95079 7.48137 8.53469 8.73825 Molecular weight = 206.08amu Principal moments of inertia in cm(-1) A = 0.049133 B = 0.008614 C = 0.007806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.749450 B = 3249.886787 C = 3585.972008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.277 3.723 3 C -0.074 4.074 4 C -0.059 4.059 5 C 0.140 3.860 6 N -0.651 5.651 7 C 0.544 3.456 8 O -0.631 6.631 9 C -0.566 4.566 10 H 0.101 0.899 11 C 0.029 3.971 12 N -0.824 5.824 13 Si 0.992 3.008 14 H -0.240 1.240 15 H -0.275 1.275 16 H -0.273 1.273 17 C 0.119 3.881 18 C -0.077 4.077 19 H 0.155 0.845 20 H 0.109 0.891 21 H 0.100 0.900 22 H 0.272 0.728 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.268 -7.893 -2.091 10.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.037 4.037 3 C -0.078 4.078 4 C -0.083 4.083 5 C 0.017 3.983 6 N -0.388 5.388 7 C 0.351 3.649 8 O -0.518 6.518 9 C -0.602 4.602 10 H 0.119 0.881 11 C -0.186 4.186 12 N -0.453 5.453 13 Si 0.812 3.188 14 H -0.162 1.162 15 H -0.201 1.201 16 H -0.199 1.199 17 C -0.005 4.005 18 C -0.116 4.116 19 H 0.173 0.827 20 H 0.127 0.873 21 H 0.118 0.882 22 H 0.082 0.918 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.643 -7.329 -1.600 10.709 hybrid contribution 0.819 0.405 -0.357 0.981 sum -6.824 -6.924 -1.957 9.917 Atomic orbital electron populations 1.81211 1.13355 1.10675 1.09984 1.26434 0.93174 0.92034 0.92062 1.17164 0.82935 1.05728 1.01951 1.23498 0.97212 0.93077 0.94484 1.20685 0.87828 0.93659 0.96083 1.48208 1.34548 1.42941 1.13089 1.18605 0.78444 0.79014 0.88872 1.90559 1.63311 1.41748 1.56205 1.21569 1.16403 1.24540 0.97675 0.88095 1.26958 0.95964 0.92660 1.03020 1.70198 1.19437 1.18267 1.37439 0.85047 0.78281 0.79220 0.76260 1.16207 1.20061 1.19861 1.21440 0.91911 1.01470 0.85651 1.20619 0.95119 0.98665 0.97238 0.82707 0.87331 0.88230 0.91811 0.89921 0.92036 0.91846 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -14.64 18.54 19.00 0.35 -14.29 15 2 C 0.28 7.45 15.04 88.33 1.33 8.78 15 3 C -0.07 -1.88 5.70 -19.46 -0.11 -1.99 15 4 C -0.06 -1.36 9.58 24.95 0.24 -1.12 15 5 C 0.14 3.99 6.46 85.43 0.55 4.55 15 6 N -0.65 -26.21 2.95 -827.46 -2.44 -28.65 15 7 C 0.54 29.41 7.66 86.36 0.66 30.08 15 8 O -0.63 -40.48 14.50 -4.29 -0.06 -40.54 15 9 C -0.57 -29.42 8.84 24.83 0.22 -29.21 15 10 H 0.10 4.49 5.84 -2.91 -0.02 4.48 15 11 C 0.03 1.53 5.50 85.31 0.47 2.00 15 12 N -0.82 -48.77 11.83 21.84 0.26 -48.51 15 13 Si 0.99 38.59 29.56 68.60 2.03 40.61 15 14 H -0.24 -8.31 7.11 99.48 0.71 -7.60 15 15 H -0.28 -10.57 7.11 99.48 0.71 -9.86 15 16 H -0.27 -10.42 7.11 99.48 0.71 -9.72 15 17 C 0.12 4.04 6.52 86.43 0.56 4.60 15 18 C -0.08 -2.16 5.95 29.83 0.18 -1.98 15 19 H 0.16 2.52 7.94 -2.91 -0.02 2.50 15 20 H 0.11 3.22 5.65 -2.39 -0.01 3.21 15 21 H 0.10 2.35 8.14 -2.39 -0.02 2.33 15 22 H 0.27 14.66 8.29 -92.71 -0.77 13.89 15 23 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.06 2.50 7.06 -2.39 -0.02 2.48 15 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 15 26 H 0.10 2.26 8.12 -2.39 -0.02 2.24 15 Total: -1.00 -72.89 237.27 5.44 -67.45 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.20 Total: 8.23 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 4.10 Total: 15.70 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -1.83 Total: -91.45 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.06 Total: -40.54 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.61 kcal Total: -72.89 5.44 -67.45 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306729269.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.413 kcal (2) G-P(sol) polarization free energy of solvation -72.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds