Wall clock time and date at job start Sun Mar 29 2020 21:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 N 1.35497 * 179.97438 * 2 1 4 4 C 1.39862 * 119.99495 * 163.27030 * 3 2 1 5 5 C 1.39266 * 119.93798 * 359.97438 * 4 3 2 6 6 C 1.38711 * 120.40057 * 180.02562 * 5 4 3 7 7 F 1.35102 * 119.86224 * 179.97438 * 6 5 4 8 8 C 1.37911 * 120.27219 * 0.02562 * 6 5 4 9 9 C 1.40705 * 119.86666 * 359.97438 * 8 6 5 10 10 C 1.41411 * 120.19929 * 180.02562 * 9 8 6 11 11 H 1.08000 * 120.00188 * 150.19526 * 10 9 8 12 12 C 1.39925 * 119.99960 * 330.18938 * 10 9 8 13 13 N 1.30830 * 119.99890 * 161.72291 * 12 10 9 14 14 Si 1.86799 * 119.99892 * 341.72931 * 12 10 9 15 15 H 1.48503 * 109.47603 * 95.41236 * 14 12 10 16 16 H 1.48507 * 109.47047 * 215.40796 * 14 12 10 17 17 H 1.48500 * 109.47311 * 335.40691 * 14 12 10 18 18 C 1.38277 * 119.93159 * 179.97438 * 4 3 2 19 19 H 0.96990 * 120.00683 * 343.26864 * 3 2 1 20 20 H 1.08004 * 119.79802 * 359.72626 * 5 4 3 21 21 H 1.07999 * 120.06787 * 180.02562 * 8 6 5 22 22 H 0.97001 * 119.99826 * 180.02562 * 13 12 10 23 23 H 1.07993 * 120.13921 * 359.97438 * 18 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 7 2.4910 0.0006 0.0000 4 6 3.1897 1.1609 -0.3487 5 6 2.4914 2.3147 -0.6961 6 6 3.1746 3.4707 -1.0441 7 9 2.4863 4.5837 -1.3798 8 6 4.5536 3.4882 -1.0497 9 6 5.2705 2.3289 -0.7006 10 6 6.6846 2.3392 -0.7035 11 1 7.2306 1.7000 -0.0255 12 6 7.3763 3.1773 -1.5849 13 7 8.6335 3.4641 -1.3639 14 14 6.5047 3.8869 -3.0769 15 1 5.9997 5.2459 -2.7554 16 1 7.4566 3.9688 -4.2138 17 1 5.3650 3.0102 -3.4478 18 6 4.5724 1.1603 -0.3477 19 1 2.9764 -0.8035 0.2418 20 1 1.4114 2.3080 -0.6994 21 1 5.0822 4.3901 -1.3207 22 1 9.1130 4.0455 -1.9747 23 1 5.1140 0.2658 -0.0779 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168636215.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:40 Heat of formation + Delta-G solvation = 2.044986 kcal Electronic energy + Delta-G solvation = -12348.746489 eV Core-core repulsion = 9883.163277 eV Total energy + Delta-G solvation = -2465.583212 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 206.055 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.05681 -38.75332 -36.57160 -34.47494 -33.24383 -30.31532 -28.61855 -25.61271 -22.22025 -21.43453 -19.07443 -18.26643 -16.61317 -15.64314 -15.08531 -14.83387 -14.77622 -14.47835 -14.27750 -13.35511 -13.16769 -12.41800 -12.05275 -12.02654 -11.71515 -11.21776 -11.17330 -10.79602 -10.23367 -9.99806 -9.68457 -9.21361 -7.87455 -7.24589 -7.18022 -4.79889 2.22333 2.25215 2.75403 3.02063 3.09197 3.11099 3.20409 3.43560 3.83864 4.22652 5.07645 5.19863 5.81155 5.98538 6.07374 6.27573 6.44223 6.68423 6.93421 7.17104 7.20284 7.50836 7.54709 7.83689 8.09083 8.29076 8.33076 8.53239 9.81738 Molecular weight = 206.06amu Principal moments of inertia in cm(-1) A = 0.042429 B = 0.010678 C = 0.009076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.762025 B = 2621.575385 C = 3084.191112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.423 3.577 3 N -0.612 5.612 4 C 0.228 3.772 5 C -0.323 4.323 6 C 0.166 3.834 7 F -0.157 7.157 8 C -0.291 4.291 9 C 0.135 3.865 10 C -0.432 4.432 11 H 0.099 0.901 12 C 0.086 3.914 13 N -0.791 5.791 14 Si 0.910 3.090 15 H -0.267 1.267 16 H -0.287 1.287 17 H -0.241 1.241 18 C -0.252 4.252 19 H 0.428 0.572 20 H 0.108 0.892 21 H 0.115 0.885 22 H 0.290 0.710 23 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.092 -2.950 -0.384 4.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C 0.018 3.982 3 N -0.248 5.248 4 C 0.133 3.867 5 C -0.346 4.346 6 C 0.146 3.854 7 F -0.136 7.136 8 C -0.312 4.312 9 C 0.131 3.869 10 C -0.459 4.459 11 H 0.117 0.883 12 C -0.136 4.136 13 N -0.413 5.413 14 Si 0.735 3.265 15 H -0.193 1.193 16 H -0.214 1.214 17 H -0.164 1.164 18 C -0.276 4.276 19 H 0.269 0.731 20 H 0.126 0.874 21 H 0.132 0.868 22 H 0.101 0.899 23 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.537 -2.738 -0.451 5.318 hybrid contribution 0.417 0.299 -0.575 0.771 sum -4.121 -2.439 -1.026 4.897 Atomic orbital electron populations 1.81882 1.05945 1.06881 1.19751 1.23584 0.86807 0.95691 0.92076 1.39765 0.96916 1.14743 1.73343 1.17110 0.90625 0.83497 0.95464 1.19774 0.98241 0.93236 1.23364 1.17117 0.89466 0.81447 0.97372 1.91383 1.80381 1.51716 1.90146 1.20992 0.91342 1.00310 1.18556 1.17143 0.93286 0.88862 0.87618 1.19516 0.89523 1.19276 1.17568 0.88323 1.26229 0.94854 0.92943 0.99610 1.69675 1.10552 1.26363 1.34751 0.86313 0.80014 0.80665 0.79480 1.19266 1.21381 1.16439 1.20459 0.89491 0.99331 1.18287 0.73112 0.87421 0.86767 0.89921 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.86 18.54 41.27 0.77 -7.10 14 2 C 0.42 6.83 14.99 -102.19 -1.53 5.30 14 3 N -0.61 -9.07 5.44 20.55 0.11 -8.96 14 4 C 0.23 4.28 6.61 -83.80 -0.55 3.73 14 5 C -0.32 -6.70 9.29 -39.03 -0.36 -7.06 14 6 C 0.17 3.68 7.28 -39.53 -0.29 3.40 14 7 F -0.16 -3.41 17.26 2.25 0.04 -3.37 14 8 C -0.29 -6.72 7.15 -38.77 -0.28 -7.00 14 9 C 0.14 3.09 5.10 -106.86 -0.55 2.55 14 10 C -0.43 -10.46 9.57 -37.74 -0.36 -10.82 14 11 H 0.10 2.45 8.06 -52.49 -0.42 2.03 14 12 C 0.09 2.05 5.40 -17.35 -0.09 1.96 14 13 N -0.79 -19.35 13.93 55.55 0.77 -18.58 14 14 Si 0.91 19.51 24.52 -169.99 -4.17 15.34 14 15 H -0.27 -5.70 6.71 56.52 0.38 -5.32 14 16 H -0.29 -5.89 7.11 56.52 0.40 -5.49 14 17 H -0.24 -5.32 6.86 56.52 0.39 -4.93 14 18 C -0.25 -5.01 9.63 -38.67 -0.37 -5.38 14 19 H 0.43 4.69 8.82 -40.82 -0.36 4.33 14 20 H 0.11 2.19 6.98 -52.48 -0.37 1.82 14 21 H 0.11 2.66 4.73 -52.49 -0.25 2.41 14 22 H 0.29 6.42 8.30 -40.82 -0.34 6.08 14 23 H 0.12 2.00 8.06 -52.49 -0.42 1.58 14 LS Contribution 220.32 15.07 3.32 3.32 Total: -1.00 -25.64 220.32 -4.53 -30.17 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -0.99 Total: 2.51 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -4.39 Total: -13.33 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 1.65 Total: -34.63 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.04 Total: -3.37 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.17 Total: 15.34 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -25.64 -4.53 -30.17 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168636215.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.218 kcal (2) G-P(sol) polarization free energy of solvation -25.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds