Wall clock time and date at job start Sun Mar 29 2020 21:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31583 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48503 * 109.46845 * 269.99935 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99425 * 3 2 1 6 6 H 1.48498 * 109.47295 * 150.00031 * 3 2 1 7 7 C 1.38638 * 120.00434 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00353 * 180.02562 * 7 2 1 9 9 O 1.34925 * 119.99341 * 0.02562 * 7 2 1 10 10 C 1.42903 * 116.99953 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.64088 * 330.70582 * 10 9 7 12 12 C 1.53877 * 109.64526 * 91.12755 * 10 9 7 13 13 C 1.54982 * 106.65869 * 167.15456 * 12 10 9 14 14 S 1.83284 * 102.47809 * 317.38597 * 13 12 10 15 15 O 1.42106 * 109.35415 * 269.89939 * 14 13 12 16 16 O 1.42095 * 109.47288 * 136.73568 * 14 13 12 17 17 C 1.54165 * 109.65028 * 210.27151 * 10 9 7 18 18 H 0.97000 * 119.99679 * 179.97438 * 1 2 3 19 19 H 1.09003 * 110.03085 * 286.33042 * 12 10 9 20 20 H 1.09006 * 110.02520 * 47.74532 * 12 10 9 21 21 H 1.09002 * 110.75191 * 199.17669 * 13 12 10 22 22 H 1.08998 * 110.90480 * 75.65905 * 13 12 10 23 23 H 1.09000 * 110.31714 * 331.14443 * 17 10 9 24 24 H 1.09002 * 110.31545 * 93.23708 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4472 2.6528 0.6999 6 1 3.5474 1.4402 0.7000 7 6 2.0091 -1.2006 0.0005 8 1 3.0891 -1.2006 0.0010 9 8 1.3344 -2.3690 0.0005 10 6 2.1127 -3.5676 0.0005 11 1 3.0631 -3.3872 -0.5018 12 6 2.3705 -4.0170 1.4495 13 6 2.9187 -5.4647 1.3747 14 16 1.8376 -6.2327 0.1095 15 8 0.7033 -6.8064 0.7448 16 8 2.6264 -7.0176 -0.7741 17 6 1.3434 -4.6852 -0.7313 18 1 -0.4850 -0.8401 -0.0004 19 1 3.1079 -3.3645 1.9172 20 1 1.4404 -3.9973 2.0175 21 1 2.8095 -5.9691 2.3348 22 1 3.9591 -5.4703 1.0496 23 1 0.2688 -4.5295 -0.6367 24 1 1.6297 -4.7159 -1.7827 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224377952.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:33 Heat of formation + Delta-G solvation = -141.123740 kcal Electronic energy + Delta-G solvation = -11855.409114 eV Core-core repulsion = 9474.396050 eV Total energy + Delta-G solvation = -2381.013064 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 206.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.27918 -38.15577 -37.16655 -35.76394 -33.50263 -30.61823 -26.42104 -25.60673 -22.31318 -20.29220 -19.86998 -17.91513 -17.73140 -16.82400 -16.64560 -16.13853 -15.46566 -15.29110 -14.84831 -14.27336 -13.78195 -13.30286 -13.21017 -13.09139 -12.82410 -12.56721 -12.09369 -11.92968 -11.87721 -11.57307 -11.39082 -11.22795 -10.22822 -8.66119 -5.97884 -0.96964 1.48648 1.54919 1.65964 1.80847 2.50088 2.56377 2.97419 3.17564 3.37218 3.47002 3.77926 3.83775 3.99828 4.25795 4.53480 4.64460 4.76581 4.91568 5.11448 5.38885 6.43461 7.15436 7.85419 8.82325 Molecular weight = 206.04amu Principal moments of inertia in cm(-1) A = 0.077086 B = 0.008408 C = 0.008193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.143421 B = 3329.306700 C = 3416.744596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.066 4.066 3 Si 1.142 2.858 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.458 4.458 8 H 0.071 0.929 9 O -0.338 6.338 10 C 0.095 3.905 11 H 0.073 0.927 12 C -0.143 4.143 13 C -0.553 4.553 14 S 2.425 3.575 15 O -0.972 6.972 16 O -0.966 6.966 17 C -0.596 4.596 18 H 0.256 0.744 19 H 0.099 0.901 20 H 0.080 0.920 21 H 0.166 0.834 22 H 0.165 0.835 23 H 0.130 0.870 24 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.198 -8.614 2.179 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.259 4.259 3 Si 0.961 3.039 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.536 4.536 8 H 0.089 0.911 9 O -0.254 6.254 10 C 0.035 3.965 11 H 0.091 0.909 12 C -0.182 4.182 13 C -0.685 4.685 14 S 2.610 3.390 15 O -0.969 6.969 16 O -0.963 6.963 17 C -0.724 4.724 18 H 0.064 0.936 19 H 0.118 0.882 20 H 0.099 0.901 21 H 0.184 0.816 22 H 0.183 0.817 23 H 0.149 0.851 24 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.571 -7.977 1.973 11.174 hybrid contribution 0.095 -0.915 -0.046 0.921 sum 7.666 -8.892 1.927 11.897 Atomic orbital electron populations 1.70704 1.07699 1.29560 1.50510 1.27919 0.97103 1.04685 0.96187 0.82558 0.73770 0.69771 0.77826 1.19913 1.20844 1.18460 1.22234 0.92125 0.84594 1.54691 0.91136 1.85401 1.34394 1.12130 1.93469 1.22395 0.94113 0.85856 0.94127 0.90873 1.22707 1.03239 0.94444 0.97777 1.30391 1.14991 1.05486 1.17638 1.07931 0.76481 0.76674 0.77867 1.93556 1.51353 1.76089 1.75890 1.93549 1.70336 1.67179 1.65253 1.30731 1.11266 1.17531 1.12865 0.93555 0.88200 0.90085 0.81571 0.81663 0.85117 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.55 13.70 21.61 0.30 -59.25 14 2 C -0.07 -3.79 5.49 84.83 0.47 -3.32 14 3 Si 1.14 48.49 29.92 68.60 2.05 50.55 14 4 H -0.27 -10.92 7.11 99.48 0.71 -10.22 14 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 14 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 14 7 C -0.46 -25.39 9.79 67.92 0.67 -24.72 14 8 H 0.07 3.60 7.64 -2.91 -0.02 3.58 14 9 O -0.34 -17.89 8.83 -81.94 -0.72 -18.61 14 10 C 0.09 3.56 3.08 31.28 0.10 3.66 14 11 H 0.07 2.56 7.80 -2.39 -0.02 2.54 14 12 C -0.14 -4.25 6.11 31.57 0.19 -4.05 14 13 C -0.55 -10.96 7.31 72.66 0.53 -10.43 14 14 S 2.43 62.56 6.10 -56.49 -0.34 62.22 14 15 O -0.97 -31.65 18.15 -127.47 -2.31 -33.96 14 16 O -0.97 -29.03 18.15 -127.47 -2.31 -31.34 14 17 C -0.60 -18.59 6.96 72.38 0.50 -18.08 14 18 H 0.26 16.75 7.97 -92.71 -0.74 16.01 14 19 H 0.10 2.92 8.14 -2.39 -0.02 2.90 14 20 H 0.08 2.56 8.14 -2.38 -0.02 2.54 14 21 H 0.17 2.39 8.14 -2.39 -0.02 2.37 14 22 H 0.17 2.40 8.14 -2.39 -0.02 2.38 14 23 H 0.13 4.42 8.09 -2.39 -0.02 4.40 14 24 H 0.15 4.09 8.14 -2.39 -0.02 4.07 14 Total: -1.00 -77.50 227.12 0.33 -77.17 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.22 Total: 10.20 kcal Atomic # 6 Polarization: -59.42 SS G_CDS: 2.46 Total: -56.96 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.30 Total: -59.25 kcal Atomic # 8 Polarization: -78.56 SS G_CDS: -5.35 Total: -83.91 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.05 Total: 50.55 kcal Atomic # 16 Polarization: 62.56 SS G_CDS: -0.34 Total: 62.22 kcal Total: -77.50 0.33 -77.17 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377952.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.957 kcal (2) G-P(sol) polarization free energy of solvation -77.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds