Wall clock time and date at job start Sun Mar 29 2020 21:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46895 * 110.99789 * 2 1 4 4 C 1.50704 * 109.47030 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00307 * 269.72925 * 4 3 2 6 6 C 1.38230 * 120.00163 * 179.76287 * 5 4 3 7 7 C 1.38236 * 120.00059 * 0.51014 * 6 5 4 8 8 C 1.50702 * 120.00227 * 179.72366 * 7 6 5 9 9 C 1.50691 * 109.46805 * 270.01971 * 8 7 6 10 10 H 1.08001 * 120.00544 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00063 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99572 * 0.02562 * 11 9 8 13 13 Si 1.86793 * 120.00475 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46684 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47325 * 119.99832 * 13 11 9 16 16 H 1.48502 * 109.47260 * 240.00323 * 13 11 9 17 17 C 1.38240 * 119.99858 * 359.74046 * 7 6 5 18 18 C 1.38231 * 119.99860 * 0.02562 * 17 7 6 19 19 H 1.08992 * 109.47459 * 299.99826 * 1 2 3 20 20 H 1.09004 * 109.47040 * 59.99976 * 1 2 3 21 21 H 1.09000 * 109.47033 * 179.97438 * 1 2 3 22 22 H 1.00902 * 111.00068 * 236.04361 * 2 1 3 23 23 H 1.08996 * 109.47424 * 299.99656 * 3 2 1 24 24 H 1.09002 * 109.47411 * 60.00282 * 3 2 1 25 25 H 1.08002 * 119.99617 * 359.97438 * 5 4 3 26 26 H 1.07996 * 120.00074 * 180.22955 * 6 5 4 27 27 H 1.09002 * 109.46609 * 30.02150 * 8 7 6 28 28 H 1.08993 * 109.46896 * 150.01808 * 8 7 6 29 29 H 0.96998 * 119.99938 * 179.97438 * 12 11 9 30 30 H 1.07996 * 120.00082 * 179.97438 * 17 7 6 31 31 H 1.07996 * 119.99977 * 179.97438 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1926 1.3187 1.1980 6 6 5.5742 1.2768 1.1986 7 6 6.2657 1.2583 0.0017 8 6 7.7722 1.2190 0.0023 9 6 8.3113 2.6262 0.0024 10 1 7.6311 3.4651 0.0024 11 6 9.6730 2.8428 0.0034 12 7 10.5013 1.8212 0.0039 13 14 10.3414 4.5871 0.0042 14 1 9.2110 5.5502 0.0029 15 1 11.1713 4.7987 1.2173 16 1 11.1730 4.7991 -1.2077 17 6 5.5752 1.2761 -1.1957 18 6 4.1934 1.3130 -1.1963 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8307 -0.5262 -0.7813 23 1 1.6460 1.8947 -0.8900 24 1 1.6460 1.8948 0.8900 25 1 3.6525 1.3380 2.1331 26 1 6.1137 1.2633 2.1341 27 1 8.1216 0.6959 0.8925 28 1 8.1223 0.6958 -0.8874 29 1 11.4592 1.9736 0.0042 30 1 6.1154 1.2620 -2.1308 31 1 3.6540 1.3273 -2.1317 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057559.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:12 Heat of formation + Delta-G solvation = -10.084645 kcal Electronic energy + Delta-G solvation = -12441.889933 eV Core-core repulsion = 10300.500051 eV Total energy + Delta-G solvation = -2141.389882 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 205.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.27350 -37.06813 -35.31634 -33.15005 -31.68820 -29.86898 -27.12500 -25.08226 -23.69408 -23.40915 -21.41427 -18.53505 -17.46195 -16.78551 -16.38570 -15.81727 -15.65508 -15.38700 -14.59769 -14.51731 -14.17314 -13.71922 -13.41109 -13.11892 -12.92422 -12.72622 -12.54016 -12.46075 -12.20075 -11.70792 -11.51606 -11.31982 -10.62502 -9.69827 -9.46431 -9.19867 -8.21496 -6.35364 0.58592 0.63768 1.38934 1.39081 1.53045 2.38807 2.95769 3.08933 3.56677 3.95763 4.04200 4.25877 4.38440 4.41323 4.57980 4.67071 4.72666 4.78947 4.88125 5.07529 5.13435 5.22713 5.35664 5.42233 5.63752 5.74286 5.76625 6.04834 6.10500 6.13132 6.30484 6.45284 6.77578 7.33424 8.88073 Molecular weight = 205.12amu Principal moments of inertia in cm(-1) A = 0.073478 B = 0.006011 C = 0.005929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.977152 B = 4657.336142 C = 4721.263138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.705 5.705 3 C 0.111 3.889 4 C -0.108 4.108 5 C -0.097 4.097 6 C -0.140 4.140 7 C -0.065 4.065 8 C 0.055 3.945 9 C -0.529 4.529 10 H 0.054 0.946 11 C 0.004 3.996 12 N -0.931 5.931 13 Si 0.968 3.032 14 H -0.265 1.265 15 H -0.275 1.275 16 H -0.275 1.275 17 C -0.138 4.138 18 C -0.108 4.108 19 H 0.066 0.934 20 H 0.029 0.971 21 H 0.076 0.924 22 H 0.345 0.655 23 H 0.048 0.952 24 H 0.084 0.916 25 H 0.137 0.863 26 H 0.110 0.890 27 H 0.001 0.999 28 H 0.002 0.998 29 H 0.266 0.734 30 H 0.112 0.888 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.496 -0.717 -1.019 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.336 5.336 3 C -0.017 4.017 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.158 4.158 7 C -0.065 4.065 8 C 0.018 3.982 9 C -0.567 4.567 10 H 0.072 0.928 11 C -0.194 4.194 12 N -0.571 5.571 13 Si 0.792 3.208 14 H -0.189 1.189 15 H -0.201 1.201 16 H -0.200 1.200 17 C -0.157 4.157 18 C -0.126 4.126 19 H 0.085 0.915 20 H 0.047 0.953 21 H 0.095 0.905 22 H 0.163 0.837 23 H 0.066 0.934 24 H 0.102 0.898 25 H 0.154 0.846 26 H 0.128 0.872 27 H 0.020 0.980 28 H 0.021 0.979 29 H 0.075 0.925 30 H 0.130 0.870 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.305 -0.832 -0.332 17.328 hybrid contribution 0.926 0.832 -0.863 1.515 sum -16.379 0.000 -1.196 16.423 Atomic orbital electron populations 1.22251 0.86424 1.02635 1.00834 1.60427 1.08769 1.13651 1.50746 1.20783 0.88919 0.90236 1.01791 1.19857 0.95916 1.02390 0.92692 1.21117 0.92843 0.98933 0.98630 1.21105 0.94925 1.02476 0.97298 1.20427 0.96556 0.95478 0.94080 1.18114 0.88018 0.96368 0.95694 1.21405 0.91890 0.92421 1.50974 0.92818 1.25956 0.97254 1.01729 0.94498 1.70092 1.03255 1.32408 1.51322 0.85357 0.78335 0.79082 0.78039 1.18950 1.20055 1.20027 1.21082 0.94917 1.02424 0.97232 1.21157 0.93066 0.99937 0.98433 0.91472 0.95266 0.90527 0.83725 0.93365 0.89799 0.84566 0.87155 0.98037 0.97931 0.92516 0.86978 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.70 127.69 1.37 1.78 16 2 N -0.70 -14.53 6.84 -541.23 -3.70 -18.23 16 3 C 0.11 2.44 5.81 85.56 0.50 2.94 16 4 C -0.11 -3.19 5.39 -19.86 -0.11 -3.29 16 5 C -0.10 -3.19 9.70 22.27 0.22 -2.98 16 6 C -0.14 -5.70 9.70 22.27 0.22 -5.49 16 7 C -0.07 -2.99 5.07 -19.86 -0.10 -3.09 16 8 C 0.05 3.05 5.10 29.10 0.15 3.20 16 9 C -0.53 -31.01 9.09 25.60 0.23 -30.77 16 10 H 0.05 3.11 7.74 -2.91 -0.02 3.09 16 11 C 0.00 0.21 5.46 84.66 0.46 0.68 16 12 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 13 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 C -0.14 -5.52 9.70 22.27 0.22 -5.30 16 18 C -0.11 -3.38 9.70 22.27 0.22 -3.17 16 19 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 20 H 0.03 0.39 8.14 -2.38 -0.02 0.37 16 21 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.34 6.84 8.81 -89.69 -0.79 6.05 16 23 H 0.05 0.94 8.09 -2.39 -0.02 0.92 16 24 H 0.08 1.73 8.08 -2.39 -0.02 1.71 16 25 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 26 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 27 H 0.00 0.08 8.09 -2.39 -0.02 0.06 16 28 H 0.00 0.14 8.08 -2.39 -0.02 0.12 16 29 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 30 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -65.52 270.28 2.28 -63.24 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.31 Total: 10.28 kcal Atomic # 6 Polarization: -48.87 SS G_CDS: 3.36 Total: -45.50 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -3.42 Total: -74.91 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.52 2.28 -63.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057559.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.160 kcal (2) G-P(sol) polarization free energy of solvation -65.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds