Wall clock time and date at job start Sun Mar 29 2020 21:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 N 1.32875 * 119.82483 * 205.70321 * 3 2 1 5 5 C 1.31464 * 121.70787 * 180.02562 * 4 3 2 6 6 C 1.38761 * 121.16181 * 0.02672 * 5 4 3 7 7 C 1.38264 * 119.51132 * 359.97197 * 6 5 4 8 8 C 1.39611 * 118.42476 * 0.02562 * 7 6 5 9 9 S 1.76200 * 120.57788 * 179.97438 * 8 7 6 10 10 C 1.76204 * 100.00181 * 350.72006 * 9 8 7 11 11 H 1.08000 * 119.99678 * 354.63215 * 10 9 8 12 12 C 1.38785 * 120.00419 * 174.63449 * 10 9 8 13 13 N 1.31564 * 120.00159 * 179.97438 * 12 10 9 14 14 Si 1.86804 * 119.99825 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47266 * 89.99819 * 14 12 10 16 16 H 1.48501 * 109.47126 * 210.00181 * 14 12 10 17 17 H 1.48496 * 109.47010 * 329.99758 * 14 12 10 18 18 H 1.07999 * 119.42037 * 180.02562 * 5 4 3 19 19 H 1.07992 * 120.24776 * 180.02562 * 6 5 4 20 20 H 1.07993 * 120.78776 * 180.02562 * 7 6 5 21 21 H 0.97006 * 119.99916 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2284 1.0396 0.5000 5 6 4.5423 1.0794 0.5182 6 6 5.2995 0.0321 0.0128 7 6 4.6627 -1.0738 -0.5194 8 6 3.2668 -1.0962 -0.5292 9 16 2.3972 -2.4768 -1.1943 10 6 3.7354 -3.3560 -1.9298 11 1 4.7246 -2.9227 -1.9416 12 6 3.5184 -4.6053 -2.4940 13 7 4.5175 -5.2615 -3.0436 14 14 1.8073 -5.3545 -2.4743 15 1 1.0750 -4.9483 -3.7006 16 1 1.9155 -6.8349 -2.4298 17 1 1.0711 -4.8758 -1.2768 18 1 5.0413 1.9423 0.9340 19 1 6.3781 0.0801 0.0357 20 1 5.2317 -1.9006 -0.9180 21 1 4.3657 -6.1345 -3.4383 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307342990.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:23 Heat of formation + Delta-G solvation = 43.787221 kcal Electronic energy + Delta-G solvation = -10235.762395 eV Core-core repulsion = 8202.369343 eV Total energy + Delta-G solvation = -2033.393052 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 206.021 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.97110 -37.59424 -34.90947 -33.61545 -32.45948 -28.21887 -25.66447 -24.62873 -20.95175 -19.69682 -17.73760 -17.37498 -17.23013 -16.17069 -15.73398 -15.11413 -14.68479 -14.13929 -13.89794 -13.86917 -13.82851 -13.24958 -13.12168 -12.93868 -11.92461 -11.72325 -11.14756 -10.94437 -10.58853 -10.38558 -8.95347 -8.64772 -6.43461 -0.41422 0.24805 0.83200 1.24244 1.35594 1.43593 1.47734 1.82911 2.09016 2.36724 2.59948 2.74140 2.93561 3.93733 3.98336 4.13557 4.34894 4.56488 5.07202 5.22390 5.58979 5.66406 6.09706 6.28472 6.75905 6.83785 8.44895 Molecular weight = 206.02amu Principal moments of inertia in cm(-1) A = 0.039319 B = 0.011935 C = 0.009217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.947674 B = 2345.575234 C = 3037.172117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.288 3.712 3 C 0.142 3.858 4 N -0.449 5.449 5 C 0.084 3.916 6 C -0.100 4.100 7 C -0.106 4.106 8 C -0.085 4.085 9 S -0.030 6.030 10 C -0.552 4.552 11 H 0.099 0.901 12 C 0.062 3.938 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.261 1.261 16 H -0.253 1.253 17 H -0.233 1.233 18 H 0.211 0.789 19 H 0.184 0.816 20 H 0.145 0.855 21 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.089 7.749 5.333 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.110 5.110 2 C -0.028 4.028 3 C -0.002 4.002 4 N -0.159 5.159 5 C -0.082 4.082 6 C -0.122 4.122 7 C -0.138 4.138 8 C -0.205 4.205 9 S 0.224 5.776 10 C -0.699 4.699 11 H 0.116 0.884 12 C -0.147 4.147 13 N -0.528 5.528 14 Si 0.716 3.284 15 H -0.186 1.186 16 H -0.176 1.176 17 H -0.157 1.157 18 H 0.228 0.772 19 H 0.201 0.799 20 H 0.162 0.838 21 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.357 7.731 5.465 9.474 hybrid contribution 1.673 -1.203 -0.749 2.193 sum 1.316 6.528 4.715 8.160 Atomic orbital electron populations 1.81100 1.12126 1.08455 1.09359 1.25140 0.92045 0.92632 0.92962 1.15758 0.85291 0.92673 1.06512 1.67443 1.12473 1.22738 1.13267 1.23420 0.87116 0.99945 0.97745 1.22734 1.03675 0.91802 0.94024 1.22004 0.91942 1.00757 0.99086 1.23159 0.98740 0.98076 1.00557 1.83152 1.15035 1.17971 1.61482 1.22858 0.96830 1.06612 1.43581 0.88377 1.25450 1.00543 0.95880 0.92780 1.69928 1.32867 1.14629 1.35372 0.86197 0.80482 0.80363 0.81407 1.18562 1.17634 1.15701 0.77208 0.79854 0.83771 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -17.52 18.54 19.00 0.35 -17.17 14 2 C 0.29 11.25 14.49 88.33 1.28 12.53 14 3 C 0.14 5.20 6.62 40.76 0.27 5.47 14 4 N -0.45 -13.84 10.27 -188.25 -1.93 -15.77 14 5 C 0.08 1.87 11.17 84.87 0.95 2.82 14 6 C -0.10 -2.28 10.10 22.40 0.23 -2.06 14 7 C -0.11 -3.56 9.29 22.61 0.21 -3.35 14 8 C -0.08 -3.31 6.15 23.13 0.14 -3.17 14 9 S -0.03 -1.38 18.63 -56.49 -1.05 -2.43 14 10 C -0.55 -28.53 9.54 67.95 0.65 -27.89 14 11 H 0.10 5.19 5.32 -2.91 -0.02 5.17 14 12 C 0.06 3.28 5.50 84.86 0.47 3.75 14 13 N -0.89 -49.10 13.96 21.64 0.30 -48.80 14 14 Si 0.89 39.91 27.74 68.60 1.90 41.81 14 15 H -0.26 -11.53 7.11 99.48 0.71 -10.82 14 16 H -0.25 -10.63 7.11 99.48 0.71 -9.92 14 17 H -0.23 -10.24 6.74 99.48 0.67 -9.57 14 18 H 0.21 2.51 8.06 -2.91 -0.02 2.49 14 19 H 0.18 2.54 8.06 -2.91 -0.02 2.51 14 20 H 0.14 5.37 5.26 -2.91 -0.02 5.35 14 21 H 0.28 14.39 8.31 -92.70 -0.77 13.62 14 Total: -1.00 -60.42 217.94 5.00 -55.42 By element: Atomic # 1 Polarization: -2.40 SS G_CDS: 1.24 Total: -1.16 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 4.19 Total: -11.90 kcal Atomic # 7 Polarization: -80.46 SS G_CDS: -1.28 Total: -81.74 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 1.90 Total: 41.81 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -1.05 Total: -2.43 kcal Total: -60.42 5.00 -55.42 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307342990.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.210 kcal (2) G-P(sol) polarization free energy of solvation -60.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds