Wall clock time and date at job start Sun Mar 29 2020 21:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46746 * 2 1 4 4 C 1.50697 * 109.47009 * 240.00438 * 2 1 3 5 5 O 1.21440 * 120.00092 * 239.99524 * 4 2 1 6 6 C 1.41027 * 120.00318 * 60.00022 * 4 2 1 7 7 H 1.08003 * 120.00059 * 353.78084 * 6 4 2 8 8 C 1.40458 * 120.00415 * 173.78061 * 6 4 2 9 9 N 1.30527 * 119.99372 * 6.26844 * 8 6 4 10 10 Si 1.86798 * 120.00448 * 186.26432 * 8 6 4 11 11 H 1.48501 * 109.46767 * 94.98546 * 10 8 6 12 12 H 1.48495 * 109.47294 * 214.98282 * 10 8 6 13 13 H 1.48503 * 109.47047 * 334.98827 * 10 8 6 14 14 N 1.46495 * 109.47140 * 120.00142 * 2 1 3 15 15 C 1.34430 * 126.82510 * 284.71016 * 14 2 1 16 16 N 1.30831 * 108.07966 * 179.89634 * 15 14 2 17 17 C 1.33237 * 109.82675 * 0.38131 * 16 15 14 18 18 N 1.30714 * 108.94868 * 359.76175 * 17 16 15 19 19 H 1.09004 * 109.46490 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47032 * 59.99672 * 1 2 3 21 21 H 1.08993 * 109.47081 * 299.99540 * 1 2 3 22 22 H 1.09004 * 109.47290 * 60.00090 * 3 2 1 23 23 H 1.09002 * 109.47109 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47622 * 299.99966 * 3 2 1 25 25 H 0.97006 * 119.99207 * 179.97438 * 9 8 6 26 26 H 1.08002 * 125.95575 * 0.04200 * 15 14 2 27 27 H 1.08001 * 125.52723 * 179.72599 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7306 -1.6976 -1.1192 6 6 1.6917 -0.2284 -2.5114 7 1 0.9909 0.5871 -2.6128 8 6 2.2637 -0.8091 -3.6553 9 7 3.0139 -1.8712 -3.5422 10 14 1.9507 -0.0615 -5.3383 11 1 3.0616 0.8612 -5.6843 12 1 1.8708 -1.1426 -6.3531 13 1 0.6709 0.6915 -5.3152 14 7 2.0184 -0.6906 1.1961 15 6 2.0293 -0.2147 2.4533 16 7 2.5409 -1.1339 3.2310 17 6 2.8745 -2.2026 2.5086 18 7 2.5738 -1.9792 1.2563 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5137 0.8900 22 1 1.6766 1.9564 0.8900 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 3.4087 -2.2724 -4.3323 26 1 1.6752 0.7563 2.7669 27 1 3.3214 -3.1067 2.8950 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001397207.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:41 Heat of formation + Delta-G solvation = 57.440240 kcal Electronic energy + Delta-G solvation = -13927.832772 eV Core-core repulsion = 11495.374593 eV Total energy + Delta-G solvation = -2432.458178 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.33656 -37.54624 -34.45237 -32.66201 -30.66647 -29.96569 -26.89264 -26.71456 -23.44648 -21.72699 -20.70672 -19.17355 -16.24524 -15.99266 -15.39057 -14.88228 -14.29841 -13.81031 -13.43503 -13.07631 -12.90521 -11.96690 -11.87625 -11.60401 -11.47811 -11.44900 -11.13789 -11.07932 -10.59354 -10.43786 -10.17776 -9.18802 -9.01833 -8.98212 -8.90044 -7.36071 -6.31203 -4.97759 2.47559 2.99430 3.07247 3.11258 3.14590 3.66688 3.95670 4.13921 4.87589 5.14761 5.21499 5.47046 5.63809 5.77920 5.87808 5.93188 6.17789 6.23396 6.44282 6.48745 6.71133 7.03626 7.18100 7.22956 7.59731 7.94850 8.72715 8.74540 8.85349 10.26341 10.47556 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.052761 B = 0.010310 C = 0.009190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.568236 B = 2715.112597 C = 3046.188642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.123 3.877 3 C -0.138 4.138 4 C 0.365 3.635 5 O -0.490 6.490 6 C -0.531 4.531 7 H 0.072 0.928 8 C 0.083 3.917 9 N -0.737 5.737 10 Si 0.906 3.094 11 H -0.270 1.270 12 H -0.277 1.277 13 H -0.261 1.261 14 N -0.342 5.342 15 C 0.221 3.779 16 N -0.560 5.560 17 C 0.145 3.855 18 N -0.241 5.241 19 H 0.058 0.942 20 H 0.084 0.916 21 H 0.047 0.953 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.088 0.912 25 H 0.274 0.726 26 H 0.205 0.795 27 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 6.084 3.861 8.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.038 3.962 3 C -0.196 4.196 4 C 0.254 3.746 5 O -0.373 6.373 6 C -0.563 4.563 7 H 0.090 0.910 8 C -0.140 4.140 9 N -0.366 5.366 10 Si 0.730 3.270 11 H -0.195 1.195 12 H -0.202 1.202 13 H -0.185 1.185 14 N -0.133 5.133 15 C -0.076 4.076 16 N -0.289 5.289 17 C -0.157 4.157 18 N -0.067 5.067 19 H 0.077 0.923 20 H 0.103 0.897 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.221 0.779 27 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -3.192 4.974 3.579 6.910 hybrid contribution -0.297 0.774 -0.747 1.116 sum -3.489 5.748 2.832 7.296 Atomic orbital electron populations 1.22005 0.92783 1.02687 1.02055 1.21981 0.94903 0.93216 0.86093 1.22010 1.01925 0.93281 1.02431 1.19329 0.83291 0.85840 0.86123 1.90564 1.35934 1.24520 1.86305 1.20562 1.26303 1.18175 0.91299 0.91011 1.25955 0.93491 0.93682 1.00915 1.69961 1.21055 1.14698 1.30873 0.86361 0.79739 0.79517 0.81336 1.19529 1.20202 1.18515 1.50769 1.43409 1.11535 1.07635 1.25694 0.99384 1.00142 0.82348 1.70378 1.21528 1.02158 1.34866 1.26072 1.02437 0.98783 0.88428 1.78827 1.14260 0.95474 1.18171 0.92275 0.89713 0.93367 0.93172 0.92183 0.89351 0.91476 0.77890 0.77822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 8.56 37.16 0.32 -2.10 15 2 C 0.12 2.57 1.08 -132.97 -0.14 2.42 15 3 C -0.14 -2.35 8.12 37.16 0.30 -2.05 15 4 C 0.37 9.75 5.83 -33.25 -0.19 9.55 15 5 O -0.49 -15.29 12.95 5.42 0.07 -15.22 15 6 C -0.53 -13.71 8.19 -37.69 -0.31 -14.02 15 7 H 0.07 1.65 7.01 -52.48 -0.37 1.28 15 8 C 0.08 2.16 5.50 -17.27 -0.09 2.07 15 9 N -0.74 -20.92 11.75 55.57 0.65 -20.27 15 10 Si 0.91 18.67 29.57 -169.99 -5.03 13.64 15 11 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 12 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 13 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 14 N -0.34 -7.37 3.42 -50.97 -0.17 -7.54 15 15 C 0.22 4.01 11.80 -90.65 -1.07 2.94 15 16 N -0.56 -10.95 11.19 -15.83 -0.18 -11.13 15 17 C 0.15 2.97 13.03 -91.82 -1.20 1.77 15 18 N -0.24 -5.85 10.10 29.29 0.30 -5.55 15 19 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 20 H 0.08 1.40 7.31 -51.93 -0.38 1.02 15 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.05 0.66 7.43 -51.93 -0.39 0.28 15 23 H 0.06 1.11 8.14 -51.93 -0.42 0.68 15 24 H 0.09 1.42 7.55 -51.93 -0.39 1.02 15 25 H 0.27 7.02 8.29 -40.82 -0.34 6.68 15 26 H 0.20 2.68 7.60 -52.49 -0.40 2.28 15 27 H 0.21 3.35 8.06 -52.49 -0.42 2.92 15 LS Contribution 240.07 15.07 3.62 3.62 Total: -1.00 -33.89 240.07 -5.88 -39.76 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -2.75 Total: 2.11 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.39 Total: 0.58 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.60 Total: -44.49 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: 0.07 Total: -15.22 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.89 -5.88 -39.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001397207.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.205 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds