Wall clock time and date at job start Sun Mar 29 2020 21:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46746 * 2 1 4 4 C 1.50697 * 109.47009 * 240.00438 * 2 1 3 5 5 O 1.21440 * 120.00092 * 239.99524 * 4 2 1 6 6 C 1.41027 * 120.00318 * 60.00022 * 4 2 1 7 7 H 1.08003 * 120.00059 * 353.78084 * 6 4 2 8 8 C 1.40458 * 120.00415 * 173.78061 * 6 4 2 9 9 N 1.30527 * 119.99372 * 6.26844 * 8 6 4 10 10 Si 1.86798 * 120.00448 * 186.26432 * 8 6 4 11 11 H 1.48501 * 109.46767 * 94.98546 * 10 8 6 12 12 H 1.48495 * 109.47294 * 214.98282 * 10 8 6 13 13 H 1.48503 * 109.47047 * 334.98827 * 10 8 6 14 14 N 1.46495 * 109.47140 * 120.00142 * 2 1 3 15 15 C 1.34430 * 126.82510 * 284.71016 * 14 2 1 16 16 N 1.30831 * 108.07966 * 179.89634 * 15 14 2 17 17 C 1.33237 * 109.82675 * 0.38131 * 16 15 14 18 18 N 1.30714 * 108.94868 * 359.76175 * 17 16 15 19 19 H 1.09004 * 109.46490 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47032 * 59.99672 * 1 2 3 21 21 H 1.08993 * 109.47081 * 299.99540 * 1 2 3 22 22 H 1.09004 * 109.47290 * 60.00090 * 3 2 1 23 23 H 1.09002 * 109.47109 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47622 * 299.99966 * 3 2 1 25 25 H 0.97006 * 119.99207 * 179.97438 * 9 8 6 26 26 H 1.08002 * 125.95575 * 0.04200 * 15 14 2 27 27 H 1.08001 * 125.52723 * 179.72599 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7306 -1.6976 -1.1192 6 6 1.6917 -0.2284 -2.5114 7 1 0.9909 0.5871 -2.6128 8 6 2.2637 -0.8091 -3.6553 9 7 3.0139 -1.8712 -3.5422 10 14 1.9507 -0.0615 -5.3383 11 1 3.0616 0.8612 -5.6843 12 1 1.8708 -1.1426 -6.3531 13 1 0.6709 0.6915 -5.3152 14 7 2.0184 -0.6906 1.1961 15 6 2.0293 -0.2147 2.4533 16 7 2.5409 -1.1339 3.2310 17 6 2.8745 -2.2026 2.5086 18 7 2.5738 -1.9792 1.2563 19 1 -0.3632 -1.0277 -0.0005 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 0.5137 0.8900 22 1 1.6766 1.9564 0.8900 23 1 3.1300 1.4426 -0.0005 24 1 1.6766 1.9564 -0.8900 25 1 3.4087 -2.2724 -4.3323 26 1 1.6752 0.7563 2.7669 27 1 3.3214 -3.1067 2.8950 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000001397207.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:41 Heat of formation + Delta-G solvation = 35.252688 kcal Electronic energy + Delta-G solvation = -13928.794896 eV Core-core repulsion = 11495.374593 eV Total energy + Delta-G solvation = -2433.420303 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.87452 -39.37082 -36.19484 -34.67422 -32.22088 -31.55541 -28.66619 -28.24723 -25.01168 -23.44549 -22.27173 -20.86585 -18.13440 -17.65905 -17.09941 -16.44281 -15.95600 -15.32564 -14.98281 -14.68511 -14.63146 -13.52771 -13.34639 -13.29901 -13.09001 -12.95062 -12.71084 -12.67092 -12.25003 -12.06080 -12.01837 -10.95753 -10.73838 -10.58853 -10.47332 -9.33929 -8.25025 -7.03297 0.98845 1.37004 1.39964 1.56327 1.64136 2.14734 2.21383 2.23953 3.36773 3.56066 3.64856 4.09141 4.11228 4.23994 4.41421 4.70748 4.75881 4.86896 4.94403 5.11246 5.26696 5.31944 5.49147 5.70977 5.99141 6.15766 6.75462 6.83062 7.32171 8.32677 8.55473 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.052761 B = 0.010310 C = 0.009190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.568236 B = 2715.112597 C = 3046.188642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.120 3.880 3 C -0.131 4.131 4 C 0.339 3.661 5 O -0.550 6.550 6 C -0.550 4.550 7 H 0.099 0.901 8 C 0.025 3.975 9 N -0.796 5.796 10 Si 0.992 3.008 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.239 1.239 14 N -0.357 5.357 15 C 0.237 3.763 16 N -0.572 5.572 17 C 0.150 3.850 18 N -0.314 5.314 19 H 0.028 0.972 20 H 0.096 0.904 21 H 0.091 0.909 22 H 0.099 0.901 23 H 0.036 0.964 24 H 0.099 0.901 25 H 0.278 0.722 26 H 0.259 0.741 27 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 8.859 4.127 11.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.036 3.964 3 C -0.189 4.189 4 C 0.233 3.767 5 O -0.438 6.438 6 C -0.582 4.582 7 H 0.117 0.883 8 C -0.193 4.193 9 N -0.426 5.426 10 Si 0.811 3.189 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.162 1.162 14 N -0.149 5.149 15 C -0.058 4.058 16 N -0.301 5.301 17 C -0.152 4.152 18 N -0.141 5.141 19 H 0.048 0.952 20 H 0.115 0.885 21 H 0.110 0.890 22 H 0.118 0.882 23 H 0.055 0.945 24 H 0.117 0.883 25 H 0.088 0.912 26 H 0.274 0.726 27 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.719 7.781 3.859 9.885 hybrid contribution 0.170 -0.092 -0.744 0.768 sum -4.549 7.689 3.116 9.462 Atomic orbital electron populations 1.21980 0.90328 1.01606 1.04779 1.21869 0.96679 0.94177 0.83697 1.22017 1.00447 0.90998 1.05452 1.20177 0.82355 0.85346 0.88869 1.90530 1.38315 1.27019 1.87887 1.21142 1.26619 1.18694 0.91716 0.88287 1.27232 0.92468 0.93595 1.05992 1.70144 1.22919 1.17019 1.32480 0.85080 0.80535 0.78488 0.74789 1.18771 1.20254 1.16183 1.50790 1.44183 1.11079 1.08824 1.26726 0.97084 1.01288 0.80751 1.70439 1.22334 1.02326 1.35002 1.26628 1.01141 0.99831 0.87648 1.78770 1.17053 0.97963 1.20356 0.95241 0.88484 0.89048 0.88199 0.94512 0.88255 0.91219 0.72584 0.75305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 8.56 71.98 0.62 -3.62 15 2 C 0.12 4.86 1.08 2.86 0.00 4.86 15 3 C -0.13 -4.05 8.12 71.98 0.58 -3.47 15 4 C 0.34 18.47 5.83 26.37 0.15 18.63 15 5 O -0.55 -36.00 12.95 -3.53 -0.05 -36.04 15 6 C -0.55 -28.39 8.19 23.50 0.19 -28.19 15 7 H 0.10 4.37 7.01 -2.91 -0.02 4.35 15 8 C 0.03 1.34 5.50 85.43 0.47 1.80 15 9 N -0.80 -46.98 11.75 21.91 0.26 -46.73 15 10 Si 0.99 37.92 29.57 68.60 2.03 39.95 15 11 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 12 H -0.28 -10.51 7.11 99.48 0.71 -9.80 15 13 H -0.24 -8.21 7.11 99.48 0.71 -7.50 15 14 N -0.36 -15.08 3.42 -315.16 -1.08 -16.16 15 15 C 0.24 7.92 11.80 180.36 2.13 10.05 15 16 N -0.57 -21.34 11.19 -204.00 -2.28 -23.62 15 17 C 0.15 6.12 13.03 180.77 2.36 8.48 15 18 N -0.31 -15.65 10.10 -61.25 -0.62 -16.27 15 19 H 0.03 1.11 8.14 -2.38 -0.02 1.09 15 20 H 0.10 2.90 7.31 -2.39 -0.02 2.89 15 21 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.10 2.08 7.43 -2.38 -0.02 2.06 15 23 H 0.04 1.29 8.14 -2.39 -0.02 1.27 15 24 H 0.10 2.83 7.55 -2.39 -0.02 2.81 15 25 H 0.28 14.85 8.29 -92.70 -0.77 14.08 15 26 H 0.26 5.28 7.60 -2.91 -0.02 5.26 15 27 H 0.23 7.54 8.06 -2.91 -0.02 7.51 15 Total: -1.00 -79.04 240.07 5.94 -73.10 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 1.17 Total: 17.22 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 6.50 Total: 8.54 kcal Atomic # 7 Polarization: -99.05 SS G_CDS: -3.72 Total: -102.77 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.05 Total: -36.04 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -79.04 5.94 -73.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001397207.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.357 kcal (2) G-P(sol) polarization free energy of solvation -79.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds