Wall clock time and date at job start Sun Mar 29 2020 21:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.33109 * 119.94540 * 2 1 4 4 C 1.31819 * 121.35812 * 180.33475 * 3 2 1 5 5 N 1.36900 * 119.43616 * 179.69147 * 4 3 2 6 6 N 1.36052 * 121.14226 * 359.66672 * 4 3 2 7 7 H 0.96991 * 120.12009 * 179.97438 * 6 4 3 8 8 C 1.35021 * 119.76886 * 0.02568 * 6 4 3 9 9 O 1.22004 * 120.63863 * 180.02562 * 8 6 4 10 10 C 1.36461 * 119.95212 * 179.72321 * 2 1 3 11 11 C 1.50701 * 120.54688 * 359.97292 * 10 2 1 12 12 C 1.50703 * 109.47064 * 94.72632 * 11 10 2 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47116 * 59.99536 * 16 14 12 18 18 H 1.48500 * 109.46585 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46730 * 299.99515 * 16 14 12 20 20 H 1.08998 * 109.47558 * 270.27821 * 1 2 3 21 21 H 1.09003 * 109.47731 * 30.28084 * 1 2 3 22 22 H 1.09000 * 109.47149 * 150.27727 * 1 2 3 23 23 H 0.96996 * 120.00504 * 179.97438 * 5 4 3 24 24 H 0.97007 * 119.99412 * 359.97438 * 5 4 3 25 25 H 1.09002 * 109.47060 * 214.72596 * 11 10 2 26 26 H 1.09001 * 109.47380 * 334.72684 * 11 10 2 27 27 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1714 1.1534 0.0000 4 6 3.4891 1.1859 -0.0066 5 7 4.1323 2.3944 -0.0127 6 7 4.2213 0.0392 -0.0069 7 1 5.1903 0.0804 -0.0121 8 6 3.5942 -1.1566 -0.0008 9 8 4.2350 -2.1947 -0.0005 10 6 2.1882 -1.1823 0.0057 11 6 1.4461 -2.4940 0.0127 12 6 1.3001 -2.9960 -1.4008 13 1 1.7038 -2.4224 -2.2219 14 6 0.6500 -4.1870 -1.6456 15 7 0.1579 -4.8852 -0.6457 16 14 0.4696 -4.8096 -3.3976 17 1 1.8152 -5.0060 -3.9941 18 1 -0.2617 -6.1020 -3.3906 19 1 -0.2876 -3.8160 -4.2004 20 1 -0.3634 0.0050 1.0276 21 1 -0.3635 0.8874 -0.5182 22 1 -0.3633 -0.8925 -0.5095 23 1 5.1017 2.4279 -0.0172 24 1 3.6185 3.2172 -0.0126 25 1 2.0026 -3.2231 0.6016 26 1 0.4585 -2.3504 0.4511 27 1 -0.2997 -5.7230 -0.8179 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000018213479.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:55 Heat of formation + Delta-G solvation = -0.961316 kcal Electronic energy + Delta-G solvation = -13565.801427 eV Core-core repulsion = 11130.810768 eV Total energy + Delta-G solvation = -2434.990660 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.02760 -37.27365 -35.74388 -33.29558 -32.78451 -30.75932 -28.55287 -26.31576 -23.45368 -22.02905 -21.47723 -18.34847 -17.82061 -16.64245 -16.22965 -15.86558 -15.29505 -14.42528 -14.37927 -13.00505 -12.87475 -12.66631 -12.18526 -11.85835 -11.72393 -10.95510 -10.73804 -10.36859 -10.10428 -9.93238 -9.79465 -9.36445 -9.22307 -9.12422 -8.23939 -7.02999 -5.85948 -3.88411 1.54606 2.61590 2.71965 3.41915 3.45446 3.49344 3.74158 4.37122 4.60556 4.96561 5.36899 5.47670 5.95573 6.13942 6.19442 6.29181 6.58924 6.78876 6.96919 7.06264 7.28942 7.50655 7.72319 7.93749 8.08907 8.50675 8.56906 8.65292 9.14027 9.72921 11.22997 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.041973 B = 0.009494 C = 0.008841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.930785 B = 2948.385950 C = 3166.333782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.172 3.828 3 N -0.587 5.587 4 C 0.605 3.395 5 N -0.835 5.835 6 N -0.657 5.657 7 H 0.401 0.599 8 C 0.536 3.464 9 O -0.527 6.527 10 C -0.238 4.238 11 C 0.080 3.920 12 C -0.499 4.499 13 H 0.049 0.951 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.098 0.902 23 H 0.407 0.593 24 H 0.422 0.578 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 14.931 1.720 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.053 3.947 3 N -0.322 5.322 4 C 0.248 3.752 5 N -0.387 5.387 6 N -0.305 5.305 7 H 0.237 0.763 8 C 0.336 3.664 9 O -0.403 6.403 10 C -0.246 4.246 11 C 0.042 3.958 12 C -0.538 4.538 13 H 0.068 0.932 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.090 0.910 21 H 0.083 0.917 22 H 0.117 0.883 23 H 0.237 0.763 24 H 0.255 0.745 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.089 14.574 1.766 15.538 hybrid contribution 1.182 -0.598 -1.029 1.678 sum 6.271 13.976 0.738 15.337 Atomic orbital electron populations 1.20715 0.88401 1.03980 1.02505 1.20536 0.96698 0.86222 0.91253 1.67834 1.01576 1.30161 1.32649 1.19020 0.87006 0.80675 0.88537 1.41543 1.09459 1.04537 1.83177 1.44876 1.11492 1.07199 1.66926 0.76250 1.17183 0.89714 0.81250 0.78274 1.90943 1.67978 1.29953 1.51460 1.21859 0.91371 0.99968 1.11418 1.17919 0.93912 0.86483 0.97510 1.20997 1.35266 1.05502 0.92001 0.93222 1.24957 0.95865 0.96580 0.96855 1.69943 1.38250 1.14882 1.30502 0.86662 0.78130 0.77998 0.85253 1.20395 1.21305 1.20291 0.91031 0.91659 0.88288 0.76323 0.74519 0.95068 0.94834 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 9.37 36.00 0.34 -1.44 15 2 C 0.17 3.46 6.77 -82.68 -0.56 2.90 15 3 N -0.59 -10.10 10.35 -10.19 -0.11 -10.21 15 4 C 0.60 8.61 8.74 -321.08 -2.80 5.81 15 5 N -0.84 -6.75 8.99 30.00 0.27 -6.48 15 6 N -0.66 -10.42 5.31 -15.66 -0.08 -10.50 15 7 H 0.40 4.84 8.85 -40.82 -0.36 4.48 15 8 C 0.54 11.99 7.72 -15.25 -0.12 11.88 15 9 O -0.53 -13.77 17.24 4.92 0.08 -13.68 15 10 C -0.24 -5.59 5.10 -104.37 -0.53 -6.13 15 11 C 0.08 2.20 4.22 -29.03 -0.12 2.08 15 12 C -0.50 -14.82 8.98 -34.44 -0.31 -15.13 15 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 15 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 15 15 N -0.90 -27.53 13.29 55.43 0.74 -26.80 15 16 Si 0.89 22.57 29.54 -169.99 -5.02 17.55 15 17 H -0.28 -7.07 7.11 56.52 0.40 -6.67 15 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 20 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 21 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 22 H 0.10 2.02 6.51 -51.93 -0.34 1.68 15 23 H 0.41 1.93 8.87 -40.82 -0.36 1.56 15 24 H 0.42 2.78 8.94 -40.82 -0.36 2.42 15 25 H 0.03 0.96 7.80 -51.93 -0.41 0.55 15 26 H 0.03 0.91 6.45 -51.93 -0.34 0.58 15 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 LS Contribution 242.12 15.07 3.65 3.65 Total: -1.00 -36.52 242.12 -7.23 -43.75 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -2.55 Total: 1.12 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -4.21 Total: 1.59 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.82 Total: -53.99 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -36.52 -7.23 -43.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000018213479.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.792 kcal (2) G-P(sol) polarization free energy of solvation -36.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds