Wall clock time and date at job start Sun Mar 29 2020 21:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36936 * 119.99656 * 2 1 4 4 H 1.07997 * 119.99449 * 159.28122 * 3 2 1 5 5 C 1.38807 * 120.00223 * 339.54835 * 3 2 1 6 6 N 1.31616 * 120.00027 * 347.61968 * 5 3 2 7 7 Si 1.86801 * 120.00036 * 167.60946 * 5 3 2 8 8 H 1.48504 * 109.46872 * 60.00648 * 7 5 3 9 9 H 1.48496 * 109.47025 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47498 * 300.00648 * 7 5 3 11 11 C 1.46494 * 120.00074 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47102 * 269.99788 * 11 2 1 13 13 C 1.38264 * 119.98653 * 269.73025 * 12 11 2 14 14 C 1.38227 * 120.05292 * 179.72501 * 13 12 11 15 15 C 1.38225 * 120.02301 * 0.53986 * 14 13 12 16 16 C 1.38432 * 119.97304 * 359.73454 * 15 14 13 17 17 F 1.35101 * 120.02607 * 180.02562 * 16 15 14 18 18 C 1.38173 * 119.98875 * 89.99939 * 12 11 2 19 19 H 1.08994 * 109.47060 * 84.89134 * 1 2 3 20 20 H 1.09000 * 109.46752 * 204.88948 * 1 2 3 21 21 H 1.09000 * 109.46974 * 324.89168 * 1 2 3 22 22 H 0.97003 * 119.99914 * 180.02562 * 6 5 3 23 23 H 1.09003 * 109.47412 * 29.99397 * 11 2 1 24 24 H 1.09001 * 109.47358 * 149.99897 * 11 2 1 25 25 H 1.08001 * 119.97273 * 359.97029 * 13 12 11 26 26 H 1.07995 * 119.98992 * 180.27369 * 14 13 12 27 27 H 1.08001 * 120.01220 * 179.74981 * 15 14 13 28 28 H 1.08007 * 120.01375 * 359.97438 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1773 1.2161 0.3309 5 6 1.5212 2.3501 -0.4200 6 7 0.3635 2.2852 -1.0427 7 14 2.3185 4.0091 -0.1013 8 1 3.6448 4.0570 -0.7677 9 1 1.4526 5.0868 -0.6434 10 1 2.4919 4.2024 1.3608 11 6 2.1976 -1.2687 -0.0006 12 6 2.4488 -1.7043 1.4201 13 6 3.6037 -1.3099 2.0698 14 6 3.8329 -1.7040 3.3748 15 6 2.9126 -2.5022 4.0279 16 6 1.7586 -2.9024 3.3764 17 9 0.8582 -3.6822 4.0139 18 6 1.5275 -2.5023 2.0709 19 1 -0.3633 0.0915 -1.0235 20 1 -0.3633 -0.9322 0.4325 21 1 -0.3633 0.8407 0.5910 22 1 -0.0755 3.0988 -1.3365 23 1 1.6085 -2.0282 -0.5146 24 1 3.1500 -1.1381 -0.5144 25 1 4.3256 -0.6901 1.5587 26 1 4.7332 -1.3916 3.8828 27 1 3.0937 -2.8133 5.0461 28 1 0.6272 -2.8136 1.5618 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020266606.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:35 Heat of formation + Delta-G solvation = -0.346498 kcal Electronic energy + Delta-G solvation = -13332.098826 eV Core-core repulsion = 10877.214865 eV Total energy + Delta-G solvation = -2454.883961 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.57079 -38.70165 -35.45459 -32.05851 -30.26214 -29.91577 -26.17743 -25.63660 -22.29070 -22.03758 -20.39442 -16.98474 -16.63079 -15.78972 -15.76435 -15.29188 -14.88397 -13.81763 -13.56760 -13.29746 -13.17760 -12.75556 -11.86418 -11.76891 -11.32846 -11.15054 -10.87584 -10.72790 -10.61212 -10.27592 -10.01656 -9.91248 -8.62271 -8.50718 -8.23714 -6.82147 -5.73795 -3.19639 1.59126 1.64456 3.37922 3.43674 3.44441 4.01178 4.51233 4.60538 5.10388 5.19596 5.39413 5.54592 5.65868 5.68969 5.81651 6.09565 6.31448 6.44011 6.51678 6.58903 6.70335 6.77915 7.10473 7.32889 7.40488 7.70341 7.79825 8.35694 9.20810 9.83362 10.30866 11.31059 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.041187 B = 0.008827 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.661477 B = 3171.335295 C = 3489.304879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.256 4.256 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.909 5.909 7 Si 0.906 3.094 8 H -0.282 1.282 9 H -0.290 1.290 10 H -0.284 1.284 11 C 0.180 3.820 12 C -0.051 4.051 13 C -0.115 4.115 14 C -0.097 4.097 15 C -0.173 4.173 16 C 0.088 3.912 17 F -0.150 7.150 18 C -0.148 4.148 19 H 0.032 0.968 20 H -0.003 1.003 21 H 0.045 0.955 22 H 0.253 0.747 23 H 0.049 0.951 24 H 0.062 0.938 25 H 0.126 0.874 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.446 -8.279 6.248 11.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.315 5.315 3 C -0.386 4.386 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.554 5.554 7 Si 0.736 3.264 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.211 1.211 11 C 0.052 3.948 12 C -0.055 4.055 13 C -0.134 4.134 14 C -0.115 4.115 15 C -0.192 4.192 16 C 0.069 3.931 17 F -0.128 7.128 18 C -0.167 4.167 19 H 0.050 0.950 20 H 0.015 0.985 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.143 0.857 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.263 -8.131 6.156 11.054 hybrid contribution 0.115 0.908 0.462 1.025 sum 4.378 -7.223 6.618 10.730 Atomic orbital electron populations 1.20847 0.82246 0.95560 0.99504 1.43899 1.01945 1.00139 1.85531 1.19152 0.96873 0.85107 1.37419 0.91307 1.24970 0.97535 0.98389 0.98681 1.70075 1.17231 1.26952 1.41112 0.86318 0.78457 0.83657 0.78005 1.20867 1.21591 1.21093 1.19818 0.97249 0.89019 0.88671 1.21171 0.91971 0.91835 1.00479 1.21143 0.97932 0.99688 0.94592 1.20945 0.98646 0.97024 0.94856 1.20936 0.94723 1.02822 1.00691 1.17744 0.88652 0.94908 0.91813 1.91445 1.66699 1.72699 1.81988 1.21039 1.01130 1.01246 0.93301 0.94989 0.98495 0.93660 0.93654 0.93247 0.92011 0.85637 0.85778 0.85738 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 8.96 59.85 0.54 4.59 15 2 N -0.59 -14.83 2.91 -182.50 -0.53 -15.36 15 3 C -0.26 -6.95 9.69 -15.06 -0.15 -7.09 15 4 H 0.07 1.80 7.86 -52.49 -0.41 1.38 15 5 C 0.00 0.06 5.12 -17.43 -0.09 -0.03 15 6 N -0.91 -26.45 10.52 55.49 0.58 -25.87 15 7 Si 0.91 21.77 29.57 -169.99 -5.03 16.75 15 8 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 9 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 11 C 0.18 3.64 5.77 -5.20 -0.03 3.61 15 12 C -0.05 -0.93 5.46 -104.64 -0.57 -1.51 15 13 C -0.11 -1.93 9.70 -39.58 -0.38 -2.31 15 14 C -0.10 -1.42 10.04 -39.59 -0.40 -1.81 15 15 C -0.17 -2.57 10.03 -39.51 -0.40 -2.96 15 16 C 0.09 1.46 7.30 -39.42 -0.29 1.17 15 17 F -0.15 -2.46 17.27 2.25 0.04 -2.42 15 18 C -0.15 -2.59 9.68 -39.51 -0.38 -2.97 15 19 H 0.03 0.85 7.41 -51.93 -0.38 0.46 15 20 H 0.00 -0.08 8.03 -51.93 -0.42 -0.49 15 21 H 0.04 1.22 7.14 -51.93 -0.37 0.85 15 22 H 0.25 7.17 8.31 -40.82 -0.34 6.83 15 23 H 0.05 0.92 8.02 -51.93 -0.42 0.51 15 24 H 0.06 1.21 7.98 -51.93 -0.41 0.79 15 25 H 0.13 2.03 8.06 -52.49 -0.42 1.60 15 26 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 27 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 28 H 0.13 2.13 8.06 -52.48 -0.42 1.71 15 LS Contribution 250.33 15.07 3.77 3.77 Total: -1.00 -29.38 250.33 -6.55 -35.94 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -3.24 Total: -3.49 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -2.15 Total: -9.32 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.05 Total: -41.23 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -29.38 -6.55 -35.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020266606.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.591 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds