Wall clock time and date at job start Sun Mar 29 2020 21:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36936 * 119.99656 * 2 1 4 4 H 1.07997 * 119.99449 * 159.28122 * 3 2 1 5 5 C 1.38807 * 120.00223 * 339.54835 * 3 2 1 6 6 N 1.31616 * 120.00027 * 347.61968 * 5 3 2 7 7 Si 1.86801 * 120.00036 * 167.60946 * 5 3 2 8 8 H 1.48504 * 109.46872 * 60.00648 * 7 5 3 9 9 H 1.48496 * 109.47025 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47498 * 300.00648 * 7 5 3 11 11 C 1.46494 * 120.00074 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47102 * 269.99788 * 11 2 1 13 13 C 1.38264 * 119.98653 * 269.73025 * 12 11 2 14 14 C 1.38227 * 120.05292 * 179.72501 * 13 12 11 15 15 C 1.38225 * 120.02301 * 0.53986 * 14 13 12 16 16 C 1.38432 * 119.97304 * 359.73454 * 15 14 13 17 17 F 1.35101 * 120.02607 * 180.02562 * 16 15 14 18 18 C 1.38173 * 119.98875 * 89.99939 * 12 11 2 19 19 H 1.08994 * 109.47060 * 84.89134 * 1 2 3 20 20 H 1.09000 * 109.46752 * 204.88948 * 1 2 3 21 21 H 1.09000 * 109.46974 * 324.89168 * 1 2 3 22 22 H 0.97003 * 119.99914 * 180.02562 * 6 5 3 23 23 H 1.09003 * 109.47412 * 29.99397 * 11 2 1 24 24 H 1.09001 * 109.47358 * 149.99897 * 11 2 1 25 25 H 1.08001 * 119.97273 * 359.97029 * 13 12 11 26 26 H 1.07995 * 119.98992 * 180.27369 * 14 13 12 27 27 H 1.08001 * 120.01220 * 179.74981 * 15 14 13 28 28 H 1.08007 * 120.01375 * 359.97438 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1773 1.2161 0.3309 5 6 1.5212 2.3501 -0.4200 6 7 0.3635 2.2852 -1.0427 7 14 2.3185 4.0091 -0.1013 8 1 3.6448 4.0570 -0.7677 9 1 1.4526 5.0868 -0.6434 10 1 2.4919 4.2024 1.3608 11 6 2.1976 -1.2687 -0.0006 12 6 2.4488 -1.7043 1.4201 13 6 3.6037 -1.3099 2.0698 14 6 3.8329 -1.7040 3.3748 15 6 2.9126 -2.5022 4.0279 16 6 1.7586 -2.9024 3.3764 17 9 0.8582 -3.6822 4.0139 18 6 1.5275 -2.5023 2.0709 19 1 -0.3633 0.0915 -1.0235 20 1 -0.3633 -0.9322 0.4325 21 1 -0.3633 0.8407 0.5910 22 1 -0.0755 3.0988 -1.3365 23 1 1.6085 -2.0282 -0.5146 24 1 3.1500 -1.1381 -0.5144 25 1 4.3256 -0.6901 1.5587 26 1 4.7332 -1.3916 3.8828 27 1 3.0937 -2.8133 5.0461 28 1 0.6272 -2.8136 1.5618 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020266606.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:35 Heat of formation + Delta-G solvation = -16.184228 kcal Electronic energy + Delta-G solvation = -13332.785601 eV Core-core repulsion = 10877.214865 eV Total energy + Delta-G solvation = -2455.570736 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.84380 -40.02874 -37.27860 -33.81529 -31.81656 -31.31939 -28.04112 -27.44100 -23.76417 -23.53697 -21.96371 -18.78264 -18.10309 -17.13617 -17.05333 -16.87692 -16.51440 -15.47944 -15.19895 -15.04285 -14.58908 -14.18437 -13.59481 -13.19557 -12.99757 -12.72495 -12.68242 -12.48559 -12.25651 -11.95365 -11.88432 -11.85520 -10.63434 -9.83530 -9.54590 -8.82606 -7.81364 -5.29315 0.30725 0.37958 1.47754 1.50668 1.56631 2.50480 2.75496 3.30759 3.36762 3.84821 3.90205 3.98019 4.22378 4.39856 4.50774 4.67074 4.81488 4.95495 5.04890 5.20682 5.23351 5.35281 5.45535 5.63323 5.70857 5.76000 6.06861 6.31507 7.14592 7.85258 8.29120 9.22214 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.041187 B = 0.008827 C = 0.008023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.661477 B = 3171.335295 C = 3489.304879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.611 5.611 3 C -0.259 4.259 4 H 0.077 0.923 5 C -0.056 4.056 6 N -0.943 5.943 7 Si 0.969 3.031 8 H -0.271 1.271 9 H -0.297 1.297 10 H -0.281 1.281 11 C 0.180 3.820 12 C -0.069 4.069 13 C -0.125 4.125 14 C -0.088 4.088 15 C -0.163 4.163 16 C 0.076 3.924 17 F -0.151 7.151 18 C -0.159 4.159 19 H 0.007 0.993 20 H 0.025 0.975 21 H 0.015 0.985 22 H 0.247 0.753 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.129 0.871 26 H 0.161 0.839 27 H 0.156 0.844 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.087 -8.712 7.847 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.334 5.334 3 C -0.388 4.388 4 H 0.095 0.905 5 C -0.251 4.251 6 N -0.590 5.590 7 Si 0.797 3.203 8 H -0.197 1.197 9 H -0.223 1.223 10 H -0.207 1.207 11 C 0.054 3.946 12 C -0.072 4.072 13 C -0.144 4.144 14 C -0.106 4.106 15 C -0.182 4.182 16 C 0.056 3.944 17 F -0.129 7.129 18 C -0.178 4.178 19 H 0.025 0.975 20 H 0.043 0.957 21 H 0.034 0.966 22 H 0.056 0.944 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.147 0.853 26 H 0.179 0.821 27 H 0.173 0.827 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.936 -8.606 7.771 13.026 hybrid contribution -0.348 0.916 0.017 0.980 sum 5.588 -7.690 7.788 12.289 Atomic orbital electron populations 1.20543 0.82822 0.95626 0.97628 1.44115 1.01990 1.01351 1.85912 1.19536 0.97260 0.86051 1.36004 0.90485 1.25763 0.98338 1.01761 0.99210 1.70248 1.18756 1.27184 1.42785 0.85309 0.77766 0.79395 0.77806 1.19671 1.22319 1.20685 1.19915 0.96977 0.87333 0.90371 1.20860 0.93426 0.93615 0.99310 1.21329 0.97509 0.99779 0.95748 1.21315 0.99640 0.95776 0.93857 1.21335 0.93487 1.01464 1.01891 1.17904 0.89440 0.95307 0.91699 1.91443 1.66888 1.72740 1.81863 1.21074 1.01107 1.01579 0.94060 0.97454 0.95680 0.96620 0.94373 0.92205 0.91678 0.85284 0.82140 0.82676 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.04 8.96 127.77 1.15 10.18 15 2 N -0.61 -30.53 2.91 -731.31 -2.13 -32.66 15 3 C -0.26 -13.96 9.69 84.03 0.81 -13.14 15 4 H 0.08 3.94 7.86 -2.91 -0.02 3.91 15 5 C -0.06 -3.15 5.12 84.86 0.43 -2.71 15 6 N -0.94 -56.09 10.52 21.65 0.23 -55.86 15 7 Si 0.97 44.80 29.57 68.60 2.03 46.83 15 8 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 9 H -0.30 -13.92 7.11 99.48 0.71 -13.22 15 10 H -0.28 -12.67 7.11 99.48 0.71 -11.96 15 11 C 0.18 7.15 5.77 85.63 0.49 7.64 15 12 C -0.07 -2.44 5.46 -19.87 -0.11 -2.55 15 13 C -0.12 -3.90 9.70 22.27 0.22 -3.69 15 14 C -0.09 -2.24 10.04 22.26 0.22 -2.02 15 15 C -0.16 -4.24 10.03 22.31 0.22 -4.02 15 16 C 0.08 2.34 7.30 22.38 0.16 2.50 15 17 F -0.15 -4.65 17.27 44.97 0.78 -3.87 15 18 C -0.16 -5.35 9.68 22.31 0.22 -5.13 15 19 H 0.01 0.39 7.41 -2.39 -0.02 0.38 15 20 H 0.02 1.09 8.03 -2.39 -0.02 1.07 15 21 H 0.01 0.84 7.14 -2.39 -0.02 0.83 15 22 H 0.25 14.36 8.31 -92.71 -0.77 13.59 15 23 H 0.06 2.20 8.02 -2.39 -0.02 2.18 15 24 H 0.06 2.50 7.98 -2.39 -0.02 2.48 15 25 H 0.13 3.88 8.06 -2.91 -0.02 3.86 15 26 H 0.16 2.92 8.06 -2.91 -0.02 2.89 15 27 H 0.16 3.08 8.06 -2.91 -0.02 3.06 15 28 H 0.13 4.15 8.06 -2.91 -0.02 4.13 15 Total: -1.00 -62.38 250.33 5.87 -56.52 By element: Atomic # 1 Polarization: 0.83 SS G_CDS: 1.14 Total: 1.98 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 3.82 Total: -12.94 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -1.90 Total: -88.52 kcal Atomic # 9 Polarization: -4.65 SS G_CDS: 0.78 Total: -3.87 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -62.38 5.87 -56.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020266606.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.332 kcal (2) G-P(sol) polarization free energy of solvation -62.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds