Wall clock time and date at job start Sun Mar 29 2020 21:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46497 * 119.99708 * 2 1 4 4 C 1.50698 * 109.47399 * 269.99995 * 3 2 1 5 5 H 1.07997 * 120.00243 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00052 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00031 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99881 * 180.02562 * 6 4 3 9 9 H 1.48492 * 109.47351 * 59.99932 * 8 6 4 10 10 H 1.48496 * 109.47035 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46816 * 299.99648 * 8 6 4 12 12 C 1.34774 * 120.00278 * 180.02562 * 2 1 3 13 13 O 1.21611 * 120.00107 * 181.74140 * 12 2 1 14 14 C 1.47428 * 120.00206 * 1.73545 * 12 2 1 15 15 C 1.41293 * 126.41217 * 345.79360 * 14 12 2 16 16 N 1.30450 * 108.02304 * 179.70347 * 15 14 12 17 17 N 1.39935 * 108.89560 * 0.40566 * 16 15 14 18 18 H 0.97003 * 125.75499 * 179.84837 * 17 16 15 19 19 C 1.34263 * 108.49160 * 359.58713 * 17 16 15 20 20 H 1.08997 * 109.46808 * 264.16747 * 1 2 3 21 21 H 1.08993 * 109.47410 * 24.17468 * 1 2 3 22 22 H 1.09002 * 109.46949 * 144.17669 * 1 2 3 23 23 H 1.09005 * 109.47589 * 30.00201 * 3 2 1 24 24 H 1.09002 * 109.47225 * 149.99940 * 3 2 1 25 25 H 0.96999 * 119.99879 * 179.97438 * 7 6 4 26 26 H 1.08001 * 125.98887 * 359.97438 * 15 14 12 27 27 H 1.07998 * 126.29356 * 180.22704 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8781 -1.6727 7 7 3.5532 3.6183 -0.6730 8 14 3.4366 3.4178 -3.4339 9 1 2.1389 3.5949 -4.1336 10 1 4.1791 4.7038 -3.4338 11 1 4.2395 2.3833 -4.1342 12 6 2.1389 -1.1671 -0.0005 13 8 3.3546 -1.1674 0.0315 14 6 1.4024 -2.4437 -0.0398 15 6 0.0216 -2.6230 0.2004 16 7 -0.2499 -3.8918 0.0662 17 7 0.9284 -4.5762 -0.2522 18 1 1.0060 -5.5313 -0.4035 19 6 1.9324 -3.6873 -0.3188 20 1 -0.3633 -0.1044 1.0223 21 1 -0.3634 0.9375 -0.4208 22 1 -0.3633 -0.8333 -0.6015 23 1 1.6084 2.0284 0.5139 24 1 3.1499 1.1385 0.5138 25 1 4.0299 4.4442 -0.8502 26 1 -0.6859 -1.8452 0.4471 27 1 2.9650 -3.9053 -0.5483 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036163418.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:49 Heat of formation + Delta-G solvation = 55.916539 kcal Electronic energy + Delta-G solvation = -13403.690119 eV Core-core repulsion = 10971.165868 eV Total energy + Delta-G solvation = -2432.524251 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.18934 -38.35047 -34.82172 -32.73186 -31.57421 -30.09532 -27.72633 -25.99327 -23.62082 -21.75023 -21.17996 -19.09436 -17.55121 -16.46106 -15.58212 -15.23817 -14.87086 -14.51229 -14.09032 -13.84598 -12.90291 -12.68493 -12.27284 -12.08558 -11.37999 -11.07850 -10.98900 -10.83811 -10.49975 -10.11223 -9.71847 -9.58063 -8.93680 -8.58668 -8.39048 -7.56161 -5.99956 -4.04595 1.76761 2.43401 2.81922 3.35004 3.39103 3.42290 3.95828 4.20166 4.48492 4.88527 5.01130 5.32611 5.39844 5.51781 5.69537 5.84148 5.92321 6.25056 6.48802 7.14143 7.16435 7.50689 7.57103 7.62255 7.97103 8.28418 8.50378 8.95405 9.19294 9.60410 11.07981 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.051889 B = 0.007837 C = 0.007668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.483948 B = 3572.017337 C = 3650.551010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.595 5.595 3 C 0.246 3.754 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.580 3.420 13 O -0.550 6.550 14 C -0.275 4.275 15 C 0.064 3.936 16 N -0.308 5.308 17 N -0.471 5.471 18 H 0.440 0.560 19 C 0.119 3.881 20 H 0.047 0.953 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.033 0.967 24 H 0.045 0.955 25 H 0.263 0.737 26 H 0.207 0.793 27 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 -12.188 1.002 14.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.326 5.326 3 C 0.127 3.873 4 C -0.565 4.565 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.367 3.633 13 O -0.430 6.430 14 C -0.290 4.290 15 C -0.123 4.123 16 N -0.130 5.130 17 N -0.177 5.177 18 H 0.284 0.716 19 C -0.033 4.033 20 H 0.066 0.934 21 H 0.094 0.906 22 H 0.088 0.912 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.223 0.777 27 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.244 -12.829 1.119 14.775 hybrid contribution 0.831 0.531 -1.142 1.509 sum -6.413 -12.298 -0.023 13.870 Atomic orbital electron populations 1.22191 0.82057 1.03354 0.99964 1.47908 1.05943 1.07535 1.71242 1.19310 0.92667 0.77893 0.97464 1.21423 1.36488 1.06226 0.92350 0.92485 1.24933 0.95397 0.96388 0.97377 1.69926 1.38421 1.14370 1.30752 0.86559 0.78334 0.77771 0.84747 1.20268 1.21217 1.20217 1.17174 0.86546 0.82387 0.77206 1.90735 1.13367 1.87247 1.51605 1.20684 0.94397 0.95061 1.18869 1.25065 0.95760 0.94044 0.97448 1.77101 1.05538 1.06804 1.23516 1.46172 1.05860 1.10156 1.55521 0.71641 1.23006 0.94967 0.88933 0.96385 0.93431 0.90575 0.91232 0.94886 0.93669 0.92693 0.77701 0.79442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.75 59.85 0.52 1.62 15 2 N -0.60 -12.99 2.86 -184.24 -0.53 -13.52 15 3 C 0.25 6.52 5.15 -5.20 -0.03 6.50 15 4 C -0.53 -15.08 9.39 -34.44 -0.32 -15.40 15 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 15 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 15 7 N -0.90 -26.77 13.29 55.43 0.74 -26.03 15 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 15 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 15 12 C 0.58 12.69 7.66 -12.52 -0.10 12.59 15 13 O -0.55 -14.23 16.50 5.27 0.09 -14.15 15 14 C -0.28 -4.65 5.90 -105.07 -0.62 -5.27 15 15 C 0.06 0.91 9.81 -16.98 -0.17 0.75 15 16 N -0.31 -4.25 12.63 30.86 0.39 -3.86 15 17 N -0.47 -5.36 7.29 30.85 0.22 -5.13 15 18 H 0.44 3.17 8.96 -182.72 -1.64 1.53 15 19 C 0.12 1.61 11.85 -16.56 -0.20 1.41 15 20 H 0.05 0.63 7.57 -51.93 -0.39 0.23 15 21 H 0.08 1.23 8.03 -51.93 -0.42 0.82 15 22 H 0.07 0.97 4.90 -51.93 -0.25 0.72 15 23 H 0.03 0.88 8.07 -51.93 -0.42 0.46 15 24 H 0.05 1.35 7.40 -51.93 -0.38 0.96 15 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 15 26 H 0.21 2.44 4.69 -52.49 -0.25 2.19 15 27 H 0.19 2.12 8.06 -52.49 -0.42 1.70 15 LS Contribution 241.19 15.07 3.63 3.63 Total: -1.00 -35.18 241.19 -5.20 -40.38 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -3.72 Total: -2.12 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: -1.00 Total: 3.84 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.82 Total: -48.55 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.15 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -35.18 -5.20 -40.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036163418.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.293 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds