Wall clock time and date at job start Sun Mar 29 2020 21:52:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47180 * 2 1 4 4 C 1.52997 * 109.46812 * 120.00047 * 2 1 3 5 5 C 1.50702 * 109.47070 * 184.99677 * 4 2 1 6 6 C 1.34520 * 125.78625 * 90.00256 * 5 4 2 7 7 C 1.41381 * 106.83580 * 180.29744 * 6 5 4 8 8 C 1.34513 * 106.84363 * 359.57150 * 7 6 5 9 9 O 1.34302 * 125.79164 * 270.04068 * 5 4 2 10 10 N 1.46906 * 109.47133 * 239.99467 * 2 1 3 11 11 C 1.46898 * 110.99661 * 85.00127 * 10 2 1 12 12 C 1.50697 * 109.47110 * 179.97438 * 11 10 2 13 13 H 1.08002 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00139 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99835 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00030 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47220 * 90.00085 * 16 14 12 18 18 H 1.48502 * 109.47268 * 209.99808 * 16 14 12 19 19 H 1.48496 * 109.47209 * 330.00193 * 16 14 12 20 20 H 1.08998 * 109.47299 * 300.00213 * 1 2 3 21 21 H 1.09003 * 109.46838 * 60.00058 * 1 2 3 22 22 H 1.09002 * 109.47585 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47588 * 64.99855 * 4 2 1 24 24 H 1.09001 * 109.47044 * 304.99856 * 4 2 1 25 25 H 1.08002 * 126.57789 * 0.02807 * 6 5 4 26 26 H 1.08009 * 126.57222 * 179.73218 * 7 6 5 27 27 H 1.07999 * 125.78721 * 180.19275 * 8 7 6 28 28 H 1.00898 * 111.00156 * 208.95353 * 10 2 1 29 29 H 1.08998 * 109.47339 * 300.00245 * 11 10 2 30 30 H 1.09002 * 109.47146 * 59.99884 * 11 10 2 31 31 H 0.96999 * 119.99966 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5418 -0.6150 1.3127 6 6 4.2362 0.3660 1.9169 7 6 5.6065 0.0745 1.7270 8 6 5.6677 -1.0721 1.0264 9 8 4.4141 -1.4833 0.7751 10 7 2.0197 -0.6926 -1.1994 11 6 2.0825 0.2224 -2.3469 12 6 2.5885 -0.5217 -3.5557 13 1 2.8381 -1.5697 -3.4792 14 6 2.7329 0.1353 -4.7592 15 7 2.4295 1.4116 -4.8521 16 14 3.3595 -0.7873 -6.2577 17 1 2.2105 -1.3693 -6.9969 18 1 4.0948 0.1500 -7.1444 19 1 4.2712 -1.8759 -5.8233 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.7516 -1.7715 1.2056 24 1 1.6053 -0.2617 2.1369 25 1 3.8256 1.2157 2.4421 26 1 6.4437 0.6590 2.0794 27 1 6.5716 -1.5746 0.7152 28 1 2.9173 -1.1206 -1.0287 29 1 1.0871 0.6162 -2.5525 30 1 2.7589 1.0460 -2.1182 31 1 2.5314 1.8739 -5.6987 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038092943.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:52 Heat of formation + Delta-G solvation = -20.096959 kcal Electronic energy + Delta-G solvation = -13598.376283 eV Core-core repulsion = 11266.096183 eV Total energy + Delta-G solvation = -2332.280100 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.45905 -38.29070 -35.16999 -33.93502 -32.72773 -30.76106 -28.10937 -27.06048 -23.94615 -22.68003 -21.84377 -21.03595 -18.65244 -18.17092 -17.17721 -16.75797 -16.34731 -15.79610 -15.37933 -14.65347 -14.13641 -13.73211 -13.71526 -13.63568 -13.49046 -13.08514 -12.81498 -12.75040 -12.43573 -12.33060 -11.96406 -11.80095 -11.28555 -10.80868 -10.67785 -9.32901 -9.15182 -8.24553 -6.36101 0.84172 1.38528 1.41059 1.52330 1.73132 2.18151 2.38289 3.08148 3.54407 3.79486 4.01348 4.16771 4.23133 4.35306 4.50641 4.64291 4.86810 4.90880 4.95188 5.02558 5.05209 5.17576 5.22438 5.32290 5.42232 5.60392 5.66373 6.01678 6.25716 6.44610 6.71159 6.86416 7.34719 8.87192 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.029841 B = 0.008641 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.072225 B = 3239.626981 C = 3816.324133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.078 3.922 3 H 0.020 0.980 4 C -0.033 4.033 5 C -0.030 4.030 6 C -0.225 4.225 7 C -0.227 4.227 8 C -0.053 4.053 9 O -0.194 6.194 10 N -0.684 5.684 11 C 0.213 3.787 12 C -0.538 4.538 13 H 0.061 0.939 14 C 0.001 3.999 15 N -0.933 5.933 16 Si 0.974 3.026 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.264 1.264 20 H 0.085 0.915 21 H 0.031 0.969 22 H 0.066 0.934 23 H 0.092 0.908 24 H 0.130 0.870 25 H 0.161 0.839 26 H 0.169 0.831 27 H 0.231 0.769 28 H 0.331 0.669 29 H 0.004 0.996 30 H -0.050 1.050 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.995 -3.541 13.664 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.032 4.032 3 H 0.038 0.962 4 C -0.070 4.070 5 C -0.080 4.080 6 C -0.244 4.244 7 C -0.246 4.246 8 C -0.120 4.120 9 O -0.091 6.091 10 N -0.316 5.316 11 C 0.085 3.915 12 C -0.576 4.576 13 H 0.079 0.921 14 C -0.197 4.197 15 N -0.573 5.573 16 Si 0.798 3.202 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.188 1.188 20 H 0.104 0.896 21 H 0.050 0.950 22 H 0.085 0.915 23 H 0.111 0.889 24 H 0.148 0.852 25 H 0.178 0.822 26 H 0.186 0.814 27 H 0.247 0.753 28 H 0.148 0.852 29 H 0.022 0.978 30 H -0.032 1.032 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.276 -3.896 13.231 13.979 hybrid contribution 1.241 0.770 -0.711 1.624 sum 3.518 -3.126 12.520 13.375 Atomic orbital electron populations 1.21716 0.92958 1.02590 1.01466 1.21677 0.97037 0.94996 0.89540 0.96201 1.20462 0.84090 1.03534 0.98934 1.22885 0.93403 0.91808 0.99882 1.21922 0.93960 1.01669 1.06873 1.22164 0.97827 0.99232 1.05389 1.24753 0.86109 0.98569 1.02537 1.84046 1.16655 1.46676 1.61685 1.60728 1.32679 1.33821 1.04416 1.19179 0.93818 0.89776 0.88698 1.21536 1.43868 0.96899 0.95288 0.92116 1.25977 0.95528 0.95800 1.02403 1.70094 1.49640 1.10653 1.26953 0.85318 0.78607 0.78259 0.78036 1.19577 1.20460 1.18843 0.89579 0.94960 0.91530 0.88924 0.85249 0.82174 0.81386 0.75274 0.85154 0.97779 1.03211 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.41 71.98 0.68 -3.39 16 2 C 0.08 2.81 2.64 44.91 0.12 2.92 16 3 H 0.02 0.80 7.80 -2.39 -0.02 0.78 16 4 C -0.03 -0.92 5.35 29.85 0.16 -0.76 16 5 C -0.03 -0.94 5.84 24.83 0.15 -0.79 16 6 C -0.23 -6.46 10.81 22.19 0.24 -6.22 16 7 C -0.23 -6.01 10.91 22.19 0.24 -5.77 16 8 C -0.05 -1.43 12.09 66.97 0.81 -0.62 16 9 O -0.19 -6.45 9.72 -2.47 -0.02 -6.48 16 10 N -0.68 -31.53 6.30 -495.58 -3.12 -34.65 16 11 C 0.21 12.11 5.24 85.56 0.45 12.56 16 12 C -0.54 -32.23 9.32 25.60 0.24 -31.99 16 13 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 14 C 0.00 0.06 5.46 84.66 0.46 0.53 16 15 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 16 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 20 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.03 1.18 7.45 -2.39 -0.02 1.16 16 22 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 25 H 0.16 3.86 8.06 -2.91 -0.02 3.83 16 26 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 27 H 0.23 4.29 8.06 -2.91 -0.02 4.26 16 28 H 0.33 15.26 6.65 -89.70 -0.60 14.66 16 29 H 0.00 0.25 7.44 -2.39 -0.02 0.23 16 30 H -0.05 -3.09 8.06 -2.39 -0.02 -3.11 16 31 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -70.16 267.48 3.22 -66.95 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.51 Total: 17.87 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 3.54 Total: -33.53 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -2.84 Total: -92.37 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.02 Total: -6.48 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -70.16 3.22 -66.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038092943.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.850 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds