Wall clock time and date at job start Sun Mar 29 2020 21:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.78786 * 2 1 4 4 C 1.53243 * 109.62932 * 120.48619 * 2 1 3 5 5 N 1.46897 * 109.36110 * 173.55562 * 4 2 1 6 6 C 1.46905 * 111.00163 * 172.72894 * 5 4 2 7 7 C 1.47200 * 109.47465 * 189.99959 * 6 5 4 8 8 N 5.77765 * 152.55517 * 117.27735 * 2 1 3 9 9 C 1.46899 * 111.26961 * 296.87782 * 5 4 2 10 10 C 1.53235 * 109.33805 * 63.10660 * 9 5 4 11 11 N 1.47076 * 108.52369 * 306.17157 * 10 9 5 12 12 C 1.36941 * 120.88336 * 231.20790 * 11 10 9 13 13 H 1.08003 * 120.00114 * 152.47677 * 12 11 10 14 14 C 1.38812 * 119.99881 * 332.47539 * 12 11 10 15 15 N 1.31621 * 120.00122 * 160.36438 * 14 12 11 16 16 Si 1.86801 * 119.99983 * 340.36136 * 14 12 11 17 17 H 1.48503 * 109.47056 * 94.27700 * 16 14 12 18 18 H 1.48499 * 109.47311 * 214.27960 * 16 14 12 19 19 H 1.48500 * 109.47340 * 334.28046 * 16 14 12 20 20 H 1.09005 * 109.47241 * 299.51405 * 1 2 3 21 21 H 1.08995 * 109.47144 * 59.51976 * 1 2 3 22 22 H 1.08999 * 109.46912 * 179.51888 * 1 2 3 23 23 H 1.08998 * 109.49464 * 53.57824 * 4 2 1 24 24 H 1.09007 * 109.48947 * 293.52542 * 4 2 1 25 25 H 1.09003 * 109.47120 * 310.00070 * 6 5 4 26 26 H 1.09000 * 109.46521 * 69.99952 * 6 5 4 27 27 H 1.09006 * 109.49358 * 183.06381 * 9 5 4 28 28 H 1.08994 * 109.49321 * 303.14771 * 9 5 4 29 29 H 1.09001 * 109.63264 * 65.87901 * 10 9 5 30 30 H 1.09003 * 109.63253 * 186.46237 * 10 9 5 31 31 H 0.97001 * 120.00135 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7323 1.2438 5 7 3.5055 -0.8643 1.1615 6 6 4.0564 -1.4058 2.4111 7 6 5.5245 -1.3011 2.3861 8 7 6.6574 -1.2204 2.3668 9 6 3.9022 -1.6873 0.0112 10 6 3.4640 -0.9945 -1.2835 11 7 2.0252 -0.7033 -1.1938 12 6 1.1686 -1.0772 -2.1947 13 1 0.1311 -1.2772 -1.9709 14 6 1.6338 -1.1993 -3.4968 15 7 0.9561 -1.9090 -4.3740 16 14 3.2216 -0.3561 -4.0042 17 1 4.3526 -1.3092 -3.8711 18 1 3.1151 0.0915 -5.4161 19 1 3.4595 0.8196 -3.1288 20 1 -0.3634 0.5063 0.8943 21 1 -0.3633 0.5212 -0.8856 22 1 -0.3633 -1.0276 -0.0086 23 1 1.5924 -1.7225 1.2962 24 1 1.7806 -0.1640 2.1358 25 1 3.6661 -0.8386 3.2561 26 1 3.7684 -2.4522 2.5117 27 1 4.9851 -1.8113 0.0088 28 1 3.4239 -2.6642 0.0807 29 1 4.0188 -0.0643 -1.4070 30 1 3.6523 -1.6518 -2.1324 31 1 1.2814 -1.9946 -5.2838 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039114139.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:07 Heat of formation + Delta-G solvation = 66.987435 kcal Electronic energy + Delta-G solvation = -14115.988970 eV Core-core repulsion = 11819.777884 eV Total energy + Delta-G solvation = -2296.211086 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.85753 -36.53092 -34.69625 -32.32507 -31.28968 -28.70450 -26.80001 -24.83978 -23.01658 -21.49280 -19.37963 -17.44149 -16.60735 -15.93113 -15.10283 -14.77275 -14.53102 -14.08077 -13.93092 -13.16801 -12.81513 -12.51433 -12.36756 -12.05099 -11.92423 -11.57139 -11.42114 -11.25141 -10.75027 -10.42486 -10.38989 -10.04125 -9.77147 -9.41736 -8.68563 -8.25460 -6.96695 -5.94682 -3.31517 2.67618 2.82293 3.33394 3.50289 3.54076 3.95251 4.27134 4.53517 4.83697 5.14531 5.21781 5.31743 5.53296 5.59716 5.77887 5.88255 5.92245 6.04639 6.15383 6.22206 6.40497 6.43090 6.65704 6.86655 6.99515 7.12694 7.24236 7.60524 7.93892 8.34005 8.91983 9.72001 10.10202 11.20843 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.034320 B = 0.011314 C = 0.009172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.655712 B = 2474.169979 C = 3051.915621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.174 3.826 3 H 0.039 0.961 4 C 0.048 3.952 5 N -0.533 5.533 6 C 0.144 3.856 7 C 0.221 3.779 8 N -0.439 5.439 9 C 0.038 3.962 10 C 0.131 3.869 11 N -0.605 5.605 12 C -0.259 4.259 13 H 0.093 0.907 14 C 0.023 3.977 15 N -0.910 5.910 16 Si 0.879 3.121 17 H -0.290 1.290 18 H -0.304 1.304 19 H -0.268 1.268 20 H 0.043 0.957 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.042 0.958 24 H 0.073 0.927 25 H 0.116 0.884 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.501 1.272 12.376 12.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.068 3.932 3 H 0.057 0.943 4 C -0.080 4.080 5 N -0.259 5.259 6 C 0.013 3.987 7 C -0.098 4.098 8 N -0.117 5.117 9 C -0.091 4.091 10 C 0.006 3.994 11 N -0.330 5.330 12 C -0.387 4.387 13 H 0.111 0.889 14 C -0.176 4.176 15 N -0.553 5.553 16 Si 0.709 3.291 17 H -0.218 1.218 18 H -0.232 1.232 19 H -0.193 1.193 20 H 0.062 0.938 21 H 0.086 0.914 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.134 0.866 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.330 1.804 12.096 12.675 hybrid contribution 0.257 -0.427 -0.369 0.621 sum 3.587 1.376 11.727 12.340 Atomic orbital electron populations 1.21800 0.94924 1.02040 1.00791 1.20531 0.93216 0.94014 0.85459 0.94291 1.22754 0.84825 1.00295 1.00173 1.61917 1.12497 1.50571 1.00920 1.19598 0.81955 1.01171 0.95981 1.29090 0.95087 0.92640 0.92981 1.81170 1.13183 1.09199 1.08147 1.22774 0.99091 0.95297 0.91938 1.21415 0.85759 0.97686 0.94586 1.44538 1.02847 1.65760 1.19807 1.18947 0.94271 1.39838 0.85614 0.88911 1.25284 0.97556 0.98945 0.95778 1.69816 1.40501 1.40168 1.04841 0.87013 0.83951 0.81116 0.76992 1.21783 1.23195 1.19285 0.93801 0.91437 0.92389 0.94012 0.90883 0.86611 0.90476 0.91876 0.93760 0.94801 0.90621 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.94 37.16 0.30 -2.01 16 2 C 0.17 3.19 3.66 -67.46 -0.25 2.95 16 3 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.05 0.70 4.91 -3.70 -0.02 0.68 16 5 N -0.53 -7.89 4.61 -237.82 -1.10 -8.99 16 6 C 0.14 1.53 5.46 -6.61 -0.04 1.50 16 7 C 0.22 2.96 14.41 -20.76 -0.30 2.66 16 8 N -0.44 -7.04 18.54 42.15 0.78 -6.26 16 9 C 0.04 0.66 5.46 -3.70 -0.02 0.64 16 10 C 0.13 2.84 4.34 -3.61 -0.02 2.82 16 11 N -0.60 -13.74 2.81 -164.44 -0.46 -14.21 16 12 C -0.26 -6.88 9.15 -15.06 -0.14 -7.02 16 13 H 0.09 2.58 6.37 -52.48 -0.33 2.25 16 14 C 0.02 0.65 5.25 -17.43 -0.09 0.56 16 15 N -0.91 -27.41 13.97 55.49 0.78 -26.64 16 16 Si 0.88 22.27 24.32 -169.99 -4.13 18.14 16 17 H -0.29 -7.16 6.70 56.52 0.38 -6.78 16 18 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 19 H -0.27 -6.73 6.42 56.52 0.36 -6.37 16 20 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.07 1.26 7.59 -51.93 -0.39 0.87 16 22 H 0.06 1.02 7.53 -51.93 -0.39 0.63 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.82 7.99 -51.92 -0.41 0.41 16 25 H 0.12 0.88 7.97 -51.93 -0.41 0.47 16 26 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 27 H 0.06 1.05 7.07 -51.93 -0.37 0.68 16 28 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.76 6.81 -51.93 -0.35 0.41 16 30 H 0.08 1.78 4.74 -51.93 -0.25 1.53 16 31 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 250.14 15.07 3.77 3.77 Total: -1.00 -31.14 250.14 -5.16 -36.30 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -4.22 Total: -4.89 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -0.57 Total: 2.78 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.00 Total: -56.09 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.13 Total: 18.14 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.14 -5.16 -36.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039114139.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.287 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds