Wall clock time and date at job start Sun Mar 29 2020 21:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.78786 * 2 1 4 4 C 1.53243 * 109.62932 * 120.48619 * 2 1 3 5 5 N 1.46897 * 109.36110 * 173.55562 * 4 2 1 6 6 C 1.46905 * 111.00163 * 172.72894 * 5 4 2 7 7 C 1.47200 * 109.47465 * 189.99959 * 6 5 4 8 8 N 5.77765 * 152.55517 * 117.27735 * 2 1 3 9 9 C 1.46899 * 111.26961 * 296.87782 * 5 4 2 10 10 C 1.53235 * 109.33805 * 63.10660 * 9 5 4 11 11 N 1.47076 * 108.52369 * 306.17157 * 10 9 5 12 12 C 1.36941 * 120.88336 * 231.20790 * 11 10 9 13 13 H 1.08003 * 120.00114 * 152.47677 * 12 11 10 14 14 C 1.38812 * 119.99881 * 332.47539 * 12 11 10 15 15 N 1.31621 * 120.00122 * 160.36438 * 14 12 11 16 16 Si 1.86801 * 119.99983 * 340.36136 * 14 12 11 17 17 H 1.48503 * 109.47056 * 94.27700 * 16 14 12 18 18 H 1.48499 * 109.47311 * 214.27960 * 16 14 12 19 19 H 1.48500 * 109.47340 * 334.28046 * 16 14 12 20 20 H 1.09005 * 109.47241 * 299.51405 * 1 2 3 21 21 H 1.08995 * 109.47144 * 59.51976 * 1 2 3 22 22 H 1.08999 * 109.46912 * 179.51888 * 1 2 3 23 23 H 1.08998 * 109.49464 * 53.57824 * 4 2 1 24 24 H 1.09007 * 109.48947 * 293.52542 * 4 2 1 25 25 H 1.09003 * 109.47120 * 310.00070 * 6 5 4 26 26 H 1.09000 * 109.46521 * 69.99952 * 6 5 4 27 27 H 1.09006 * 109.49358 * 183.06381 * 9 5 4 28 28 H 1.08994 * 109.49321 * 303.14771 * 9 5 4 29 29 H 1.09001 * 109.63264 * 65.87901 * 10 9 5 30 30 H 1.09003 * 109.63253 * 186.46237 * 10 9 5 31 31 H 0.97001 * 120.00135 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0448 -0.7323 1.2438 5 7 3.5055 -0.8643 1.1615 6 6 4.0564 -1.4058 2.4111 7 6 5.5245 -1.3011 2.3861 8 7 6.6574 -1.2204 2.3668 9 6 3.9022 -1.6873 0.0112 10 6 3.4640 -0.9945 -1.2835 11 7 2.0252 -0.7033 -1.1938 12 6 1.1686 -1.0772 -2.1947 13 1 0.1311 -1.2772 -1.9709 14 6 1.6338 -1.1993 -3.4968 15 7 0.9561 -1.9090 -4.3740 16 14 3.2216 -0.3561 -4.0042 17 1 4.3526 -1.3092 -3.8711 18 1 3.1151 0.0915 -5.4161 19 1 3.4595 0.8196 -3.1288 20 1 -0.3634 0.5063 0.8943 21 1 -0.3633 0.5212 -0.8856 22 1 -0.3633 -1.0276 -0.0086 23 1 1.5924 -1.7225 1.2962 24 1 1.7806 -0.1640 2.1358 25 1 3.6661 -0.8386 3.2561 26 1 3.7684 -2.4522 2.5117 27 1 4.9851 -1.8113 0.0088 28 1 3.4239 -2.6642 0.0807 29 1 4.0188 -0.0643 -1.4070 30 1 3.6523 -1.6518 -2.1324 31 1 1.2814 -1.9946 -5.2838 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039114139.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:07 Heat of formation + Delta-G solvation = 43.560991 kcal Electronic energy + Delta-G solvation = -14117.004817 eV Core-core repulsion = 11819.777884 eV Total energy + Delta-G solvation = -2297.226933 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.18949 -37.75957 -36.12861 -34.03726 -33.03216 -30.08656 -28.11844 -26.45235 -24.64184 -22.92025 -20.95758 -18.49750 -18.40782 -17.47566 -16.37565 -16.25041 -16.15831 -15.46818 -15.32509 -14.54203 -14.46120 -14.08114 -13.67567 -13.52980 -13.42421 -13.00048 -12.71951 -12.57439 -12.27488 -12.07317 -11.96519 -11.76207 -11.46770 -11.32527 -10.70827 -9.43388 -8.83813 -8.11773 -5.42075 1.28742 1.41034 1.48472 1.63800 1.83420 2.43577 2.94778 3.09026 3.20343 3.35633 4.10387 4.19963 4.27395 4.41340 4.54652 4.58768 4.62796 4.69047 4.80905 4.91003 4.95875 5.03934 5.10930 5.47678 5.59175 5.90114 5.97631 6.07155 6.23607 6.61751 6.95717 7.68279 8.10408 9.07758 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.034320 B = 0.011314 C = 0.009172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.655712 B = 2474.169979 C = 3051.915621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.161 3.839 3 H 0.037 0.963 4 C 0.059 3.941 5 N -0.546 5.546 6 C 0.148 3.852 7 C 0.241 3.759 8 N -0.493 5.493 9 C 0.052 3.948 10 C 0.126 3.874 11 N -0.619 5.619 12 C -0.230 4.230 13 H 0.074 0.926 14 C -0.036 4.036 15 N -0.959 5.959 16 Si 0.933 3.067 17 H -0.284 1.284 18 H -0.315 1.315 19 H -0.266 1.266 20 H 0.088 0.912 21 H 0.037 0.963 22 H 0.045 0.955 23 H 0.044 0.956 24 H 0.120 0.880 25 H 0.161 0.839 26 H 0.106 0.894 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.025 0.975 30 H 0.049 0.951 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.705 1.734 15.476 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 H 0.054 0.946 4 C -0.069 4.069 5 N -0.272 5.272 6 C 0.018 3.982 7 C -0.076 4.076 8 N -0.172 5.172 9 C -0.078 4.078 10 C 0.000 4.000 11 N -0.345 5.345 12 C -0.360 4.360 13 H 0.092 0.908 14 C -0.230 4.230 15 N -0.606 5.606 16 Si 0.764 3.236 17 H -0.211 1.211 18 H -0.244 1.244 19 H -0.190 1.190 20 H 0.107 0.893 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.062 0.938 24 H 0.138 0.862 25 H 0.178 0.822 26 H 0.124 0.876 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.067 0.933 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.557 2.286 15.258 15.833 hybrid contribution 0.126 -0.532 -1.212 1.330 sum 3.683 1.754 14.046 14.627 Atomic orbital electron populations 1.21721 0.94034 1.01419 1.01609 1.20893 0.94147 0.94030 0.85361 0.94571 1.22626 0.84313 1.00531 0.99411 1.61772 1.12944 1.50692 1.01776 1.19929 0.79750 1.03568 0.94918 1.29630 0.95574 0.90990 0.91433 1.81205 1.15037 1.11153 1.09760 1.22454 0.99291 0.94955 0.91086 1.21354 0.85132 0.97106 0.96409 1.44754 1.02911 1.66554 1.20255 1.18981 0.94026 1.36663 0.86325 0.90821 1.25805 1.00355 1.00547 0.96315 1.69927 1.42663 1.42897 1.05107 0.86121 0.81478 0.80252 0.75751 1.21125 1.24443 1.19037 0.89306 0.94399 0.93597 0.93797 0.86165 0.82155 0.87615 0.91305 0.93671 0.95755 0.93254 0.93283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 7.94 71.98 0.57 -3.50 16 2 C 0.16 5.45 3.66 44.95 0.16 5.61 16 3 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 4 C 0.06 1.41 4.91 86.39 0.42 1.84 16 5 N -0.55 -13.70 4.61 -906.34 -4.18 -17.88 16 6 C 0.15 2.32 5.46 84.50 0.46 2.78 16 7 C 0.24 5.62 14.41 89.44 1.29 6.91 16 8 N -0.49 -14.79 18.54 20.00 0.37 -14.42 16 9 C 0.05 1.66 5.46 86.38 0.47 2.13 16 10 C 0.13 5.29 4.34 86.35 0.37 5.67 16 11 N -0.62 -27.56 2.81 -674.15 -1.89 -29.46 16 12 C -0.23 -12.39 9.15 84.03 0.77 -11.62 16 13 H 0.07 4.20 6.37 -2.91 -0.02 4.18 16 14 C -0.04 -2.09 5.25 84.86 0.45 -1.64 16 15 N -0.96 -59.71 13.97 21.65 0.30 -59.41 16 16 Si 0.93 47.36 24.32 68.60 1.67 49.02 16 17 H -0.28 -13.90 6.70 99.48 0.67 -13.23 16 18 H -0.32 -16.40 7.11 99.48 0.71 -15.69 16 19 H -0.27 -13.13 6.42 99.48 0.64 -12.49 16 20 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 21 H 0.04 1.38 7.59 -2.39 -0.02 1.36 16 22 H 0.04 1.53 7.53 -2.39 -0.02 1.51 16 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.12 1.83 7.99 -2.38 -0.02 1.81 16 25 H 0.16 1.24 7.97 -2.39 -0.02 1.22 16 26 H 0.11 1.23 8.12 -2.39 -0.02 1.21 16 27 H 0.07 2.12 7.07 -2.38 -0.02 2.11 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.02 1.07 6.81 -2.39 -0.02 1.06 16 30 H 0.05 2.32 4.74 -2.39 -0.01 2.31 16 31 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -70.49 250.14 2.25 -68.24 By element: Atomic # 1 Polarization: -5.28 SS G_CDS: 1.01 Total: -4.27 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 4.97 Total: 8.17 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -5.40 Total: -121.16 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.67 Total: 49.02 kcal Total: -70.49 2.25 -68.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039114139.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.804 kcal (2) G-P(sol) polarization free energy of solvation -70.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds