Wall clock time and date at job start Sun Mar 29 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46737 * 2 1 4 4 C 1.50693 * 109.47066 * 240.00376 * 2 1 3 5 5 H 1.08003 * 119.99683 * 240.00089 * 4 2 1 6 6 C 1.37880 * 120.00501 * 59.99814 * 4 2 1 7 7 N 1.31513 * 119.99566 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00006 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46861 * 90.00330 * 8 6 4 10 10 H 1.48499 * 109.46858 * 209.99910 * 8 6 4 11 11 H 1.48494 * 109.47130 * 330.00282 * 8 6 4 12 12 N 1.46898 * 109.46986 * 119.99764 * 2 1 3 13 13 C 1.46893 * 111.00440 * 275.00371 * 12 2 1 14 14 C 1.50699 * 109.47357 * 179.97438 * 13 12 2 15 15 C 1.39875 * 126.03728 * 89.97354 * 14 13 12 16 16 N 1.30839 * 108.20184 * 180.02562 * 15 14 13 17 17 N 1.40085 * 108.20364 * 0.02562 * 16 15 14 18 18 C 1.46506 * 126.03688 * 180.02562 * 17 16 15 19 19 C 1.34949 * 107.93019 * 359.97438 * 17 16 15 20 20 H 1.08993 * 109.46684 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46897 * 299.99679 * 1 2 3 22 22 H 1.09004 * 109.46693 * 60.00012 * 1 2 3 23 23 H 0.97001 * 119.99821 * 179.97438 * 7 6 4 24 24 H 1.00904 * 111.00066 * 38.95531 * 12 2 1 25 25 H 1.08999 * 109.47312 * 59.99876 * 13 12 2 26 26 H 1.09001 * 109.46881 * 299.99724 * 13 12 2 27 27 H 1.08003 * 125.89835 * 359.76152 * 15 14 13 28 28 H 1.09006 * 109.46733 * 269.99752 * 18 17 16 29 29 H 1.08996 * 109.47043 * 29.99734 * 18 17 16 30 30 H 1.09000 * 109.46815 * 150.00063 * 18 17 16 31 31 H 1.07998 * 126.13002 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.3449 -2.1614 -4.4124 10 1 2.4874 -0.1401 -5.1120 11 1 3.6309 -1.7565 -3.7119 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2225 2.3469 14 6 2.5873 -0.5219 3.5560 15 6 3.9255 -0.6560 3.9404 16 7 3.9663 -1.3682 5.0372 17 7 2.6534 -1.7108 5.3856 18 6 2.2497 -2.5047 6.5488 19 6 1.8262 -1.1794 4.4613 20 1 -0.3632 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.7088 1.1613 -3.4844 24 1 1.4496 -1.4979 1.4101 25 1 1.0871 0.6163 2.5525 26 1 2.7589 1.0461 2.1183 27 1 4.7781 -0.2463 3.4192 28 1 2.2250 -3.5602 6.2774 29 1 2.9648 -2.3541 7.3574 30 1 1.2588 -2.1906 6.8768 31 1 0.7496 -1.2644 4.4462 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041054915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:32 Heat of formation + Delta-G solvation = 78.218461 kcal Electronic energy + Delta-G solvation = -13303.917321 eV Core-core repulsion = 11008.193249 eV Total energy + Delta-G solvation = -2295.724073 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.90565 -35.99120 -33.36951 -32.36119 -30.41838 -28.24097 -26.50698 -25.09262 -23.51418 -20.85883 -20.09729 -19.88262 -16.83802 -16.00722 -15.33187 -14.69572 -14.35610 -13.98250 -13.60600 -13.30803 -12.77223 -12.55361 -12.39835 -12.07744 -11.57276 -11.19796 -10.88826 -10.78440 -10.43022 -10.33897 -10.08295 -9.82800 -9.19352 -8.94512 -8.30810 -8.14125 -7.09253 -5.92780 -3.95566 2.08910 2.69420 3.10509 3.36583 3.42790 3.48318 4.50030 4.60361 5.01990 5.07207 5.28217 5.32654 5.38668 5.66466 5.67573 5.86515 6.17940 6.36915 6.57360 6.74289 6.88594 6.92797 7.15918 7.20141 7.45011 7.79798 7.92123 7.96238 8.35261 8.64420 8.71033 9.12297 9.69716 11.14172 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057602 B = 0.006151 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.977793 B = 4551.332431 C = 4726.524614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.209 3.791 3 H 0.034 0.966 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.679 5.679 13 C 0.134 3.866 14 C -0.213 4.213 15 C 0.067 3.933 16 N -0.309 5.309 17 N -0.385 5.385 18 C 0.106 3.894 19 C 0.047 3.953 20 H 0.026 0.974 21 H 0.005 0.995 22 H 0.088 0.912 23 H 0.259 0.741 24 H 0.323 0.677 25 H 0.022 0.978 26 H 0.071 0.929 27 H 0.183 0.817 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.308 -3.391 14.333 14.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.052 0.948 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.309 5.309 13 C 0.003 3.997 14 C -0.225 4.225 15 C -0.119 4.119 16 N -0.131 5.131 17 N -0.168 5.168 18 C -0.036 4.036 19 C -0.098 4.098 20 H 0.045 0.955 21 H 0.024 0.976 22 H 0.107 0.893 23 H 0.068 0.932 24 H 0.139 0.861 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.200 0.800 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.989 -3.792 15.046 15.548 hybrid contribution -1.344 -0.038 -1.284 1.860 sum -0.355 -3.830 13.762 14.289 Atomic orbital electron populations 1.22435 1.00871 0.99081 1.00426 1.19191 0.89489 0.94499 0.86639 0.94814 1.21183 1.29963 1.12320 0.89635 0.91999 1.24949 0.95425 0.95221 0.99000 1.69885 1.37520 1.23266 1.23233 0.86520 0.79253 0.79218 0.82530 1.20929 1.21416 1.19884 1.60831 1.58045 1.08909 1.03119 1.20161 0.97813 0.94411 0.87287 1.20288 0.92864 1.08703 1.00630 1.23806 0.97831 0.96913 0.93389 1.77285 0.98075 1.20095 1.17630 1.48361 1.04532 1.42391 1.21545 1.21745 1.01063 0.94819 0.85957 1.22297 0.97258 0.98719 0.91575 0.95459 0.97634 0.89332 0.93156 0.86050 0.96008 0.91025 0.80032 0.91123 0.89717 0.89879 0.81448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 8.94 37.16 0.33 -3.73 16 2 C 0.21 5.30 2.57 -68.86 -0.18 5.13 16 3 H 0.03 0.93 7.80 -51.93 -0.40 0.53 16 4 C -0.49 -13.80 8.84 -34.44 -0.30 -14.10 16 5 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.90 11.32 55.43 0.63 -25.27 16 8 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.68 -14.68 6.22 -109.23 -0.68 -15.36 16 13 C 0.13 2.44 5.96 -4.98 -0.03 2.41 16 14 C -0.21 -3.48 5.61 -105.05 -0.59 -4.07 16 15 C 0.07 1.08 11.96 -17.36 -0.21 0.87 16 16 N -0.31 -5.00 12.58 30.63 0.39 -4.61 16 17 N -0.39 -5.26 4.01 -68.16 -0.27 -5.53 16 18 C 0.11 0.90 11.47 59.85 0.69 1.59 16 19 C 0.05 0.66 11.40 -17.22 -0.20 0.47 16 20 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 21 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.32 6.73 8.46 -39.29 -0.33 6.40 16 25 H 0.02 0.39 7.44 -51.93 -0.39 0.00 16 26 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 27 H 0.18 2.61 8.06 -52.48 -0.42 2.19 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 267.12 15.07 4.03 4.03 Total: -1.00 -31.36 267.12 -5.84 -37.20 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.32 Total: 2.85 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.58 Total: -10.01 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.06 Total: -50.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.36 -5.84 -37.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041054915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.417 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds