Wall clock time and date at job start Sun Mar 29 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46737 * 2 1 4 4 C 1.50693 * 109.47066 * 240.00376 * 2 1 3 5 5 H 1.08003 * 119.99683 * 240.00089 * 4 2 1 6 6 C 1.37880 * 120.00501 * 59.99814 * 4 2 1 7 7 N 1.31513 * 119.99566 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00006 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46861 * 90.00330 * 8 6 4 10 10 H 1.48499 * 109.46858 * 209.99910 * 8 6 4 11 11 H 1.48494 * 109.47130 * 330.00282 * 8 6 4 12 12 N 1.46898 * 109.46986 * 119.99764 * 2 1 3 13 13 C 1.46893 * 111.00440 * 275.00371 * 12 2 1 14 14 C 1.50699 * 109.47357 * 179.97438 * 13 12 2 15 15 C 1.39875 * 126.03728 * 89.97354 * 14 13 12 16 16 N 1.30839 * 108.20184 * 180.02562 * 15 14 13 17 17 N 1.40085 * 108.20364 * 0.02562 * 16 15 14 18 18 C 1.46506 * 126.03688 * 180.02562 * 17 16 15 19 19 C 1.34949 * 107.93019 * 359.97438 * 17 16 15 20 20 H 1.08993 * 109.46684 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46897 * 299.99679 * 1 2 3 22 22 H 1.09004 * 109.46693 * 60.00012 * 1 2 3 23 23 H 0.97001 * 119.99821 * 179.97438 * 7 6 4 24 24 H 1.00904 * 111.00066 * 38.95531 * 12 2 1 25 25 H 1.08999 * 109.47312 * 59.99876 * 13 12 2 26 26 H 1.09001 * 109.46881 * 299.99724 * 13 12 2 27 27 H 1.08003 * 125.89835 * 359.76152 * 15 14 13 28 28 H 1.09006 * 109.46733 * 269.99752 * 18 17 16 29 29 H 1.08996 * 109.47043 * 29.99734 * 18 17 16 30 30 H 1.09000 * 109.46815 * 150.00063 * 18 17 16 31 31 H 1.07998 * 126.13002 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3226 -1.1194 -4.0080 9 1 1.3449 -2.1614 -4.4124 10 1 2.4874 -0.1401 -5.1120 11 1 3.6309 -1.7565 -3.7119 12 7 2.0197 -0.6924 1.1995 13 6 2.0824 0.2225 2.3469 14 6 2.5873 -0.5219 3.5560 15 6 3.9255 -0.6560 3.9404 16 7 3.9663 -1.3682 5.0372 17 7 2.6534 -1.7108 5.3856 18 6 2.2497 -2.5047 6.5488 19 6 1.8262 -1.1794 4.4613 20 1 -0.3632 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.7088 1.1613 -3.4844 24 1 1.4496 -1.4979 1.4101 25 1 1.0871 0.6163 2.5525 26 1 2.7589 1.0461 2.1183 27 1 4.7781 -0.2463 3.4192 28 1 2.2250 -3.5602 6.2774 29 1 2.9648 -2.3541 7.3574 30 1 1.2588 -2.1906 6.8768 31 1 0.7496 -1.2644 4.4462 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041054915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:32 Heat of formation + Delta-G solvation = 56.407185 kcal Electronic energy + Delta-G solvation = -13304.863129 eV Core-core repulsion = 11008.193249 eV Total energy + Delta-G solvation = -2296.669880 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.03461 -37.76988 -34.86592 -33.85415 -31.94128 -29.70089 -27.67362 -27.17739 -24.95104 -22.14456 -21.84589 -21.10287 -18.46772 -17.55522 -16.72479 -16.31189 -15.78359 -15.30077 -15.12536 -14.85425 -14.13626 -13.68760 -13.60917 -13.40330 -13.27518 -12.89389 -12.72440 -12.66561 -12.21728 -12.11064 -11.85126 -11.51411 -10.98048 -10.44323 -10.29237 -9.34155 -8.80921 -8.05086 -6.16098 0.98560 1.45075 1.46015 1.57170 1.76202 1.86939 2.48161 3.22666 3.69225 4.00291 4.05415 4.34895 4.40042 4.48089 4.65769 4.72031 4.78278 4.92972 4.94658 4.98255 5.17504 5.28894 5.49901 5.72199 5.74702 5.88980 6.20415 6.33987 6.74024 6.77503 6.91671 7.01707 7.54080 8.99849 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057602 B = 0.006151 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.977793 B = 4551.332431 C = 4726.524614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.003 0.997 4 C -0.514 4.514 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.684 5.684 13 C 0.143 3.857 14 C -0.242 4.242 15 C 0.053 3.947 16 N -0.334 5.334 17 N -0.381 5.381 18 C 0.094 3.906 19 C 0.064 3.936 20 H 0.031 0.969 21 H 0.029 0.971 22 H 0.060 0.940 23 H 0.260 0.740 24 H 0.329 0.671 25 H 0.030 0.970 26 H 0.058 0.942 27 H 0.186 0.814 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 -4.493 15.347 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.552 4.552 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.314 5.314 13 C 0.013 3.987 14 C -0.254 4.254 15 C -0.133 4.133 16 N -0.157 5.157 17 N -0.163 5.163 18 C -0.046 4.046 19 C -0.084 4.084 20 H 0.050 0.950 21 H 0.048 0.952 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.146 0.854 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.203 0.797 28 H 0.101 0.899 29 H 0.110 0.890 30 H 0.134 0.866 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 0.311 -4.910 16.097 16.832 hybrid contribution -1.149 0.282 -1.482 1.897 sum -0.838 -4.628 14.615 15.353 Atomic orbital electron populations 1.22228 0.99854 0.99224 1.00172 1.18957 0.90160 0.92771 0.87588 0.97897 1.21469 1.30228 1.12323 0.91226 0.93071 1.25691 0.95545 0.95889 1.01775 1.70007 1.38150 1.24244 1.23894 0.85543 0.78720 0.78241 0.78998 1.20096 1.20943 1.19770 1.60695 1.57892 1.09497 1.03331 1.20012 0.98010 0.93738 0.86926 1.20129 0.93383 1.10849 1.01027 1.23962 0.98257 0.97289 0.93758 1.77231 0.99905 1.20720 1.17811 1.48784 1.03629 1.41647 1.22255 1.22187 1.02927 0.94970 0.84467 1.22729 0.98567 0.96696 0.90393 0.94966 0.95237 0.92123 0.93056 0.85397 0.95190 0.92304 0.79703 0.89859 0.89005 0.86649 0.78167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.40 8.94 71.99 0.64 -6.76 16 2 C 0.21 10.92 2.57 44.17 0.11 11.03 16 3 H 0.00 0.17 7.80 -2.39 -0.02 0.16 16 4 C -0.51 -29.04 8.84 25.60 0.23 -28.81 16 5 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 6 C 0.01 0.50 5.30 84.66 0.45 0.95 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.29 16 8 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 N -0.68 -29.39 6.22 -499.48 -3.11 -32.50 16 13 C 0.14 5.16 5.96 85.56 0.51 5.67 16 14 C -0.24 -7.62 5.61 -20.14 -0.11 -7.73 16 15 C 0.05 1.68 11.96 85.24 1.02 2.70 16 16 N -0.33 -10.42 12.58 -57.02 -0.72 -11.14 16 17 N -0.38 -9.42 4.01 -369.55 -1.48 -10.91 16 18 C 0.09 1.28 11.47 127.77 1.47 2.75 16 19 C 0.06 1.61 11.40 83.54 0.95 2.57 16 20 H 0.03 1.45 8.13 -2.39 -0.02 1.43 16 21 H 0.03 1.22 7.45 -2.39 -0.02 1.20 16 22 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 23 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 24 H 0.33 13.36 8.46 -89.69 -0.76 12.60 16 25 H 0.03 1.03 7.44 -2.39 -0.02 1.01 16 26 H 0.06 2.23 8.06 -2.39 -0.02 2.21 16 27 H 0.19 5.44 8.06 -2.91 -0.02 5.42 16 28 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.20 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -66.89 267.12 2.59 -64.31 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 0.36 Total: 14.58 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 5.27 Total: -17.63 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -5.06 Total: -107.83 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.89 2.59 -64.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041054915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.713 kcal (2) G-P(sol) polarization free energy of solvation -66.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds