Wall clock time and date at job start Sun Mar 29 2020 22:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 110.99883 * 2 1 4 4 C 1.50706 * 109.47176 * 293.94754 * 3 2 1 5 5 H 1.07999 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47216 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 119.99848 * 8 6 4 11 11 H 1.48501 * 109.47057 * 239.99829 * 8 6 4 12 12 C 1.46899 * 110.99679 * 123.95259 * 2 1 3 13 13 C 1.50703 * 109.47387 * 66.04415 * 12 2 1 14 14 C 1.39874 * 126.03613 * 90.02467 * 13 12 2 15 15 N 1.30835 * 108.20052 * 179.97438 * 14 13 12 16 16 N 1.40088 * 108.20327 * 0.02562 * 15 14 13 17 17 C 1.46505 * 126.03589 * 180.02562 * 16 15 14 18 18 C 1.34942 * 107.92691 * 359.75788 * 16 15 14 19 19 H 1.09007 * 109.47214 * 60.00587 * 1 2 3 20 20 H 1.09002 * 109.47259 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47697 * 300.00606 * 1 2 3 22 22 H 1.09001 * 109.46739 * 173.95162 * 3 2 1 23 23 H 1.09000 * 109.47767 * 53.95421 * 3 2 1 24 24 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.47358 * 186.05143 * 12 2 1 26 26 H 1.09003 * 109.47119 * 306.04487 * 12 2 1 27 27 H 1.07993 * 125.89717 * 359.97438 * 14 13 12 28 28 H 1.09004 * 109.47356 * 89.97065 * 17 16 15 29 29 H 1.08993 * 109.47166 * 209.97864 * 17 16 15 30 30 H 1.09005 * 109.47098 * 329.97330 * 17 16 15 31 31 H 1.08006 * 126.12574 * 180.24252 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2986 5 1 1.0741 1.5113 -2.0486 6 6 2.0277 3.3490 -1.5290 7 7 2.7137 4.0011 -0.6158 8 14 1.5828 4.1867 -3.1383 9 1 0.8148 3.2444 -3.9911 10 1 0.7562 5.3883 -2.8590 11 1 2.8243 4.5932 -3.8445 12 6 1.9954 -0.7660 1.1376 13 6 1.6368 -2.2204 0.9730 14 6 2.4063 -3.1888 0.3198 15 7 1.7682 -4.3292 0.3838 16 7 0.5705 -4.1221 1.0802 17 6 -0.4412 -5.1394 1.3765 18 6 0.5160 -2.8213 1.4352 19 1 -0.3634 0.5138 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 3.0797 1.3443 0.1083 23 1 1.5611 1.9274 0.8309 24 1 2.9882 4.9173 -0.7779 25 1 3.0796 -0.6611 1.1758 26 1 1.5610 -0.3872 2.0628 27 1 3.3619 -3.0236 -0.1553 28 1 -0.2152 -5.6088 2.3340 29 1 -1.4242 -4.6711 1.4245 30 1 -0.4370 -5.8955 0.5913 31 1 -0.2805 -2.3448 1.9875 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042211354.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:35 Heat of formation + Delta-G solvation = 84.897394 kcal Electronic energy + Delta-G solvation = -13411.129384 eV Core-core repulsion = 11115.694932 eV Total energy + Delta-G solvation = -2295.434452 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.93180 -36.43192 -33.20599 -32.44166 -30.32941 -27.70233 -26.95228 -25.58376 -23.33517 -20.82618 -20.58154 -19.63522 -16.63782 -16.15356 -15.40132 -14.73723 -14.38540 -14.08752 -13.86448 -13.49992 -12.88901 -12.54913 -12.47789 -12.02400 -11.85608 -11.27593 -10.97558 -10.80415 -10.59808 -10.44232 -10.29243 -9.81314 -9.17577 -9.14584 -8.40298 -8.11333 -7.10939 -5.98175 -3.98879 2.09669 2.70277 3.11219 3.34008 3.41346 3.46869 4.47771 4.61630 5.02030 5.06959 5.26637 5.30232 5.36536 5.41504 5.63814 5.83951 6.14113 6.20198 6.35234 6.37611 6.57421 6.81249 6.92227 7.20773 7.36328 7.41100 7.86848 7.93363 8.16065 8.29676 8.63356 9.09600 9.65242 11.12739 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.063311 B = 0.006213 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.158491 B = 4505.301882 C = 4584.769611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.536 5.536 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.128 3.872 13 C -0.208 4.208 14 C 0.067 3.933 15 N -0.309 5.309 16 N -0.385 5.385 17 C 0.106 3.894 18 C 0.049 3.951 19 H 0.069 0.931 20 H 0.044 0.956 21 H 0.008 0.992 22 H 0.031 0.969 23 H -0.010 1.010 24 H 0.260 0.740 25 H 0.075 0.925 26 H 0.026 0.974 27 H 0.183 0.817 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.468 -13.518 5.273 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.261 5.261 3 C 0.066 3.934 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.002 4.002 13 C -0.219 4.219 14 C -0.119 4.119 15 N -0.131 5.131 16 N -0.169 5.169 17 C -0.036 4.036 18 C -0.097 4.097 19 H 0.088 0.912 20 H 0.062 0.938 21 H 0.027 0.973 22 H 0.049 0.951 23 H 0.008 0.992 24 H 0.069 0.931 25 H 0.094 0.906 26 H 0.044 0.956 27 H 0.199 0.801 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.330 -14.916 4.593 16.492 hybrid contribution -0.571 1.861 0.154 1.953 sum -5.900 -13.054 4.748 15.092 Atomic orbital electron populations 1.22183 0.89268 0.98996 1.00387 1.62089 1.06799 1.17297 1.39898 1.19753 0.95450 0.81607 0.96541 1.21221 1.34445 0.96837 1.01722 0.91873 1.24986 0.95386 0.97377 0.96938 1.69975 1.38610 1.11373 1.34039 0.86460 0.78140 0.79271 0.83658 1.19703 1.21184 1.21024 1.20320 0.99958 0.87489 0.92399 1.20179 0.96623 0.97445 1.07679 1.23787 1.00186 0.89604 0.98360 1.77282 0.94725 1.23685 1.17371 1.48357 1.16887 1.07451 1.44162 1.21739 0.88873 0.90896 1.02049 1.22276 1.00288 0.84835 1.02287 0.91196 0.93774 0.97348 0.95135 0.99206 0.93054 0.90617 0.95597 0.80051 0.91285 0.89846 0.89646 0.81563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.13 60.07 0.55 1.36 16 2 N -0.54 -11.87 4.74 -245.82 -1.17 -13.04 16 3 C 0.19 5.05 4.72 -4.98 -0.02 5.03 16 4 C -0.50 -14.35 8.52 -34.44 -0.29 -14.65 16 5 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.13 2.35 5.45 -4.98 -0.03 2.33 16 13 C -0.21 -3.42 4.99 -105.05 -0.52 -3.94 16 14 C 0.07 1.09 11.96 -17.36 -0.21 0.88 16 15 N -0.31 -5.01 12.58 30.62 0.39 -4.63 16 16 N -0.39 -5.30 4.01 -68.16 -0.27 -5.57 16 17 C 0.11 0.91 11.47 59.85 0.69 1.60 16 18 C 0.05 0.69 9.94 -17.23 -0.17 0.52 16 19 H 0.07 1.51 6.86 -51.92 -0.36 1.15 16 20 H 0.04 0.78 6.11 -51.93 -0.32 0.46 16 21 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 22 H 0.03 0.85 7.93 -51.93 -0.41 0.44 16 23 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.08 1.38 7.93 -51.93 -0.41 0.97 16 26 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.18 2.61 8.06 -52.49 -0.42 2.18 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.17 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 266.27 15.07 4.01 4.01 Total: -1.00 -32.66 266.27 -5.82 -38.48 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -4.38 Total: -4.46 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.11 Total: -5.43 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.32 Total: -49.45 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.66 -5.82 -38.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042211354.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.382 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds