Wall clock time and date at job start Sun Mar 29 2020 22:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 110.99883 * 2 1 4 4 C 1.50706 * 109.47176 * 293.94754 * 3 2 1 5 5 H 1.07999 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47216 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 119.99848 * 8 6 4 11 11 H 1.48501 * 109.47057 * 239.99829 * 8 6 4 12 12 C 1.46899 * 110.99679 * 123.95259 * 2 1 3 13 13 C 1.50703 * 109.47387 * 66.04415 * 12 2 1 14 14 C 1.39874 * 126.03613 * 90.02467 * 13 12 2 15 15 N 1.30835 * 108.20052 * 179.97438 * 14 13 12 16 16 N 1.40088 * 108.20327 * 0.02562 * 15 14 13 17 17 C 1.46505 * 126.03589 * 180.02562 * 16 15 14 18 18 C 1.34942 * 107.92691 * 359.75788 * 16 15 14 19 19 H 1.09007 * 109.47214 * 60.00587 * 1 2 3 20 20 H 1.09002 * 109.47259 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47697 * 300.00606 * 1 2 3 22 22 H 1.09001 * 109.46739 * 173.95162 * 3 2 1 23 23 H 1.09000 * 109.47767 * 53.95421 * 3 2 1 24 24 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.47358 * 186.05143 * 12 2 1 26 26 H 1.09003 * 109.47119 * 306.04487 * 12 2 1 27 27 H 1.07993 * 125.89717 * 359.97438 * 14 13 12 28 28 H 1.09004 * 109.47356 * 89.97065 * 17 16 15 29 29 H 1.08993 * 109.47166 * 209.97864 * 17 16 15 30 30 H 1.09005 * 109.47098 * 329.97330 * 17 16 15 31 31 H 1.08006 * 126.12574 * 180.24252 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0471 -1.2986 5 1 1.0741 1.5113 -2.0486 6 6 2.0277 3.3490 -1.5290 7 7 2.7137 4.0011 -0.6158 8 14 1.5828 4.1867 -3.1383 9 1 0.8148 3.2444 -3.9911 10 1 0.7562 5.3883 -2.8590 11 1 2.8243 4.5932 -3.8445 12 6 1.9954 -0.7660 1.1376 13 6 1.6368 -2.2204 0.9730 14 6 2.4063 -3.1888 0.3198 15 7 1.7682 -4.3292 0.3838 16 7 0.5705 -4.1221 1.0802 17 6 -0.4412 -5.1394 1.3765 18 6 0.5160 -2.8213 1.4352 19 1 -0.3634 0.5138 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 3.0797 1.3443 0.1083 23 1 1.5611 1.9274 0.8309 24 1 2.9882 4.9173 -0.7779 25 1 3.0796 -0.6611 1.1758 26 1 1.5610 -0.3872 2.0628 27 1 3.3619 -3.0236 -0.1553 28 1 -0.2152 -5.6088 2.3340 29 1 -1.4242 -4.6711 1.4245 30 1 -0.4370 -5.8955 0.5913 31 1 -0.2805 -2.3448 1.9875 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042211354.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:34 Heat of formation + Delta-G solvation = 61.841168 kcal Electronic energy + Delta-G solvation = -13412.129177 eV Core-core repulsion = 11115.694932 eV Total energy + Delta-G solvation = -2296.434245 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.07982 -38.14638 -34.81001 -33.99241 -31.71926 -29.15569 -28.64172 -26.94801 -25.09809 -22.37146 -21.87113 -20.94518 -18.49507 -17.56090 -16.79182 -16.39179 -15.87029 -15.57304 -15.34073 -14.99662 -14.12086 -13.90038 -13.62050 -13.45624 -13.24972 -13.03871 -12.83646 -12.55359 -12.37951 -12.23820 -11.78768 -11.57919 -11.21062 -10.59117 -10.27658 -9.33991 -8.86642 -8.16882 -6.26771 0.97727 1.42436 1.43540 1.56945 1.75686 1.85959 2.43721 3.15301 3.58725 3.77089 4.01608 4.27899 4.39400 4.48644 4.53274 4.69309 4.72242 4.76284 4.88484 4.96597 5.09950 5.22768 5.27654 5.37669 5.68631 5.72465 6.10155 6.20052 6.42550 6.71834 6.78240 6.90399 7.42985 8.93967 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.063311 B = 0.006213 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.158491 B = 4505.301882 C = 4584.769611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.547 5.547 3 C 0.206 3.794 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.134 3.866 13 C -0.236 4.236 14 C 0.054 3.946 15 N -0.332 5.332 16 N -0.380 5.380 17 C 0.094 3.906 18 C 0.065 3.935 19 H 0.050 0.950 20 H 0.072 0.928 21 H 0.013 0.987 22 H 0.005 0.995 23 H -0.035 1.035 24 H 0.264 0.736 25 H 0.067 0.933 26 H 0.033 0.967 27 H 0.187 0.813 28 H 0.088 0.912 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 -14.478 5.092 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 N -0.272 5.272 3 C 0.080 3.920 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.005 3.995 13 C -0.248 4.248 14 C -0.132 4.132 15 N -0.155 5.155 16 N -0.163 5.163 17 C -0.046 4.046 18 C -0.083 4.083 19 H 0.069 0.931 20 H 0.091 0.909 21 H 0.032 0.968 22 H 0.023 0.977 23 H -0.017 1.017 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.204 0.796 28 H 0.106 0.894 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.958 -15.923 4.418 17.930 hybrid contribution -0.113 2.053 0.288 2.077 sum -7.071 -13.870 4.706 16.264 Atomic orbital electron populations 1.22129 0.87851 1.00523 0.99645 1.62008 1.08181 1.14797 1.42193 1.19407 0.93820 0.83822 0.94952 1.21504 1.34594 0.97456 1.02402 0.92215 1.25886 0.95067 0.98044 1.00604 1.70093 1.39470 1.11871 1.36118 0.85349 0.78059 0.78179 0.79101 1.18971 1.20295 1.20422 1.20221 0.99411 0.88540 0.91287 1.20004 0.98366 0.96208 1.10213 1.23948 1.00737 0.89801 0.98682 1.77235 0.96026 1.23742 1.18485 1.48781 1.16643 1.08256 1.42578 1.22188 0.88843 0.90358 1.03161 1.22662 0.99877 0.84935 1.00813 0.93135 0.90941 0.96838 0.97651 1.01745 0.92712 0.91484 0.94881 0.79631 0.89362 0.86948 0.89167 0.78474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.83 9.13 127.69 1.17 3.00 16 2 N -0.55 -24.34 4.74 -931.64 -4.42 -28.76 16 3 C 0.21 11.19 4.72 85.56 0.40 11.59 16 4 C -0.52 -30.12 8.52 25.60 0.22 -29.90 16 5 H 0.06 3.42 7.10 -2.91 -0.02 3.40 16 6 C 0.00 0.10 5.46 84.65 0.46 0.56 16 7 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 8 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.13 4.93 5.45 85.56 0.47 5.40 16 13 C -0.24 -7.49 4.99 -20.14 -0.10 -7.59 16 14 C 0.05 1.71 11.96 85.24 1.02 2.73 16 15 N -0.33 -10.31 12.58 -57.03 -0.72 -11.03 16 16 N -0.38 -9.39 4.01 -369.56 -1.48 -10.87 16 17 C 0.09 1.27 11.47 127.77 1.47 2.74 16 18 C 0.06 1.65 9.94 83.54 0.83 2.48 16 19 H 0.05 2.15 6.86 -2.38 -0.02 2.13 16 20 H 0.07 2.39 6.11 -2.39 -0.01 2.38 16 21 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 22 H 0.01 0.31 7.93 -2.39 -0.02 0.29 16 23 H -0.04 -2.04 8.12 -2.39 -0.02 -2.06 16 24 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 25 H 0.07 2.52 7.93 -2.39 -0.02 2.51 16 26 H 0.03 1.16 8.12 -2.39 -0.02 1.14 16 27 H 0.19 5.42 8.06 -2.91 -0.02 5.40 16 28 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.20 3.69 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -70.22 266.27 2.72 -67.50 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: 1.10 Total: 1.72 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 5.93 Total: -8.99 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -6.34 Total: -107.10 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -70.22 2.72 -67.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042211354.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.345 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds