Wall clock time and date at job start Sun Mar 29 2020 21:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46905 * 109.47030 * 2 1 4 4 C 1.46900 * 110.99845 * 297.30501 * 3 2 1 5 5 C 1.50693 * 109.47021 * 288.64467 * 4 3 2 6 6 H 1.08006 * 120.00152 * 1.23179 * 5 4 3 7 7 C 1.37879 * 120.00220 * 181.22880 * 5 4 3 8 8 N 1.31513 * 120.00231 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99806 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47320 * 89.99574 * 9 7 5 11 11 H 1.48499 * 109.47245 * 209.99753 * 9 7 5 12 12 H 1.48510 * 109.47208 * 329.99848 * 9 7 5 13 13 C 1.46902 * 110.99786 * 61.25784 * 3 2 1 14 14 C 1.50696 * 109.47105 * 66.04824 * 13 3 2 15 15 C 1.34510 * 125.79178 * 89.99772 * 14 13 3 16 16 C 1.41384 * 106.84464 * 179.97438 * 15 14 13 17 17 C 1.34515 * 106.83803 * 0.02562 * 16 15 14 18 18 O 1.34305 * 108.42186 * 359.73401 * 17 16 15 19 19 H 1.08996 * 109.47183 * 179.48910 * 1 2 3 20 20 H 1.08996 * 109.47184 * 299.49399 * 1 2 3 21 21 H 1.09001 * 109.46598 * 59.49074 * 1 2 3 22 22 H 1.08996 * 109.47540 * 239.99836 * 2 1 3 23 23 H 1.08998 * 109.46471 * 119.99410 * 2 1 3 24 24 H 1.09002 * 109.47317 * 48.64790 * 4 3 2 25 25 H 1.09003 * 109.46753 * 168.64570 * 4 3 2 26 26 H 0.97004 * 119.99774 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.47605 * 306.04616 * 13 3 2 28 28 H 1.09002 * 109.46662 * 186.04622 * 13 3 2 29 29 H 1.07998 * 126.58232 * 0.03547 * 15 14 13 30 30 H 1.07993 * 126.58094 * 179.97438 * 16 15 14 31 31 H 1.07998 * 125.78844 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6020 2.0910 -1.2186 5 6 2.3753 1.5588 -2.3975 6 1 3.0898 0.7608 -2.2589 7 6 2.1706 2.0905 -3.6531 8 7 2.8458 1.6263 -4.6818 9 14 0.9354 3.4711 -3.8927 10 1 1.6161 4.7797 -3.7212 11 1 0.3591 3.3882 -5.2588 12 1 -0.1512 3.3430 -2.8885 13 6 1.5734 2.1012 1.2025 14 6 2.2209 1.4920 2.4193 15 6 3.3974 1.8649 2.9541 16 6 3.6190 1.0341 4.0764 17 6 2.5648 0.2027 4.1599 18 8 1.7186 0.4883 3.1569 19 1 -0.3633 -1.0276 -0.0092 20 1 -0.3633 0.5059 0.8944 21 1 -0.3632 0.5217 -0.8854 22 1 1.8935 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 0.5359 1.9337 -1.3824 25 1 1.7990 3.1572 -1.1063 26 1 2.7021 2.0007 -5.5651 27 1 0.4898 2.0236 1.2904 28 1 1.8576 3.1507 1.1267 29 1 4.0476 2.6493 2.5958 30 1 4.4714 1.0611 4.7390 31 1 2.4209 -0.5614 4.9094 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042223186.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:31 Heat of formation + Delta-G solvation = 23.214838 kcal Electronic energy + Delta-G solvation = -13796.692130 eV Core-core repulsion = 11466.290170 eV Total energy + Delta-G solvation = -2330.401960 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.27997 -37.39863 -32.79902 -32.55976 -30.74930 -29.52748 -27.21094 -24.74885 -22.82708 -21.45161 -20.41106 -19.27026 -17.05840 -16.65363 -15.95775 -15.16747 -14.61840 -14.48932 -13.93994 -13.09075 -12.68772 -12.54521 -12.43034 -12.42473 -11.98473 -11.57144 -11.28278 -11.05246 -10.62742 -10.49753 -10.08590 -9.92837 -9.63592 -9.31622 -8.56884 -8.22079 -7.37524 -6.04897 -4.01907 1.99409 2.89085 3.26620 3.27806 3.35411 3.35959 4.41175 4.85888 4.99697 5.26129 5.27355 5.28481 5.62356 5.72643 5.82146 5.92056 6.02488 6.06652 6.22481 6.33557 6.38565 6.46628 6.75275 6.78082 6.89728 7.03382 7.42310 7.58018 7.85333 7.98042 8.64985 9.04952 9.56296 11.08361 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.050052 B = 0.007866 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.289452 B = 3558.806914 C = 3653.916136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.059 3.941 3 N -0.520 5.520 4 C 0.158 3.842 5 C -0.506 4.506 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.122 3.878 14 C 0.014 3.986 15 C -0.204 4.204 16 C -0.213 4.213 17 C -0.057 4.057 18 O -0.178 6.178 19 H 0.052 0.948 20 H 0.046 0.954 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.057 0.943 24 H 0.000 1.000 25 H 0.023 0.977 26 H 0.263 0.737 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.146 0.854 30 H 0.143 0.857 31 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.186 -0.507 14.787 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.069 4.069 3 N -0.243 5.243 4 C 0.032 3.968 5 C -0.544 4.544 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.539 5.539 9 Si 0.700 3.300 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.193 1.193 13 C -0.006 4.006 14 C -0.037 4.037 15 C -0.224 4.224 16 C -0.232 4.232 17 C -0.124 4.124 18 O -0.074 6.074 19 H 0.071 0.929 20 H 0.065 0.935 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.075 0.925 24 H 0.017 0.983 25 H 0.041 0.959 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.164 0.836 30 H 0.161 0.839 31 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.923 -0.628 14.512 14.816 hybrid contribution -1.181 0.787 -0.123 1.425 sum -4.104 0.158 14.388 14.963 Atomic orbital electron populations 1.22389 0.99307 1.01499 1.01578 1.22025 0.92084 0.90703 1.02130 1.62259 1.59003 1.02112 1.00953 1.20276 0.94928 0.93889 0.87709 1.20995 1.23039 1.20620 0.89760 0.90129 1.24886 0.95831 0.96691 0.95910 1.69892 1.41600 1.42675 0.99756 0.86895 0.82257 0.83165 0.77634 1.20143 1.21191 1.19274 1.20647 0.96900 0.97335 0.85702 1.22534 0.95550 0.90477 0.95124 1.21545 0.97975 1.04558 0.98284 1.21788 1.00838 0.99478 1.01120 1.23883 0.91383 1.03221 0.93956 1.84030 1.44636 1.44458 1.34316 0.92901 0.93483 0.91713 0.89491 0.92465 0.98258 0.95871 0.92664 0.93587 0.88416 0.83588 0.83930 0.78709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 9.27 37.16 0.34 -2.97 16 2 C 0.06 1.16 5.74 -3.82 -0.02 1.14 16 3 N -0.52 -10.95 4.65 -237.52 -1.11 -12.05 16 4 C 0.16 3.75 3.66 -4.98 -0.02 3.73 16 5 C -0.51 -14.29 9.12 -34.44 -0.31 -14.60 16 6 H 0.08 2.50 7.68 -52.48 -0.40 2.10 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 9 Si 0.87 21.23 27.44 -169.99 -4.66 16.57 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.23 6.58 56.52 0.37 -5.86 16 13 C 0.12 2.14 5.27 -4.98 -0.03 2.11 16 14 C 0.01 0.23 5.88 -35.63 -0.21 0.02 16 15 C -0.20 -3.17 10.81 -39.70 -0.43 -3.59 16 16 C -0.21 -2.84 10.91 -39.70 -0.43 -3.27 16 17 C -0.06 -0.73 12.09 29.42 0.36 -0.37 16 18 O -0.18 -2.82 10.02 5.69 0.06 -2.76 16 19 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 20 H 0.05 0.77 6.33 -51.93 -0.33 0.44 16 21 H 0.06 1.24 6.22 -51.93 -0.32 0.91 16 22 H 0.09 1.90 7.15 -51.93 -0.37 1.52 16 23 H 0.06 1.07 6.75 -51.93 -0.35 0.72 16 24 H 0.00 0.00 5.02 -51.93 -0.26 -0.26 16 25 H 0.02 0.55 7.18 -51.93 -0.37 0.17 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.05 0.77 6.05 -51.93 -0.31 0.46 16 28 H 0.10 1.59 7.87 -51.93 -0.41 1.18 16 29 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 30 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 31 H 0.20 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 255.96 15.07 3.86 3.86 Total: -1.00 -30.84 255.96 -5.92 -36.76 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -3.99 Total: 0.33 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: -0.85 Total: -15.94 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: -0.33 Total: -38.80 kcal Atomic # 8 Polarization: -2.82 SS G_CDS: 0.06 Total: -2.76 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.66 Total: 16.57 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.84 -5.92 -36.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042223186.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.971 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds