Wall clock time and date at job start Sun Mar 29 2020 21:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46905 * 109.47030 * 2 1 4 4 C 1.46900 * 110.99845 * 297.30501 * 3 2 1 5 5 C 1.50693 * 109.47021 * 288.64467 * 4 3 2 6 6 H 1.08006 * 120.00152 * 1.23179 * 5 4 3 7 7 C 1.37879 * 120.00220 * 181.22880 * 5 4 3 8 8 N 1.31513 * 120.00231 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99806 * 0.02562 * 7 5 4 10 10 H 1.48499 * 109.47320 * 89.99574 * 9 7 5 11 11 H 1.48499 * 109.47245 * 209.99753 * 9 7 5 12 12 H 1.48510 * 109.47208 * 329.99848 * 9 7 5 13 13 C 1.46902 * 110.99786 * 61.25784 * 3 2 1 14 14 C 1.50696 * 109.47105 * 66.04824 * 13 3 2 15 15 C 1.34510 * 125.79178 * 89.99772 * 14 13 3 16 16 C 1.41384 * 106.84464 * 179.97438 * 15 14 13 17 17 C 1.34515 * 106.83803 * 0.02562 * 16 15 14 18 18 O 1.34305 * 108.42186 * 359.73401 * 17 16 15 19 19 H 1.08996 * 109.47183 * 179.48910 * 1 2 3 20 20 H 1.08996 * 109.47184 * 299.49399 * 1 2 3 21 21 H 1.09001 * 109.46598 * 59.49074 * 1 2 3 22 22 H 1.08996 * 109.47540 * 239.99836 * 2 1 3 23 23 H 1.08998 * 109.46471 * 119.99410 * 2 1 3 24 24 H 1.09002 * 109.47317 * 48.64790 * 4 3 2 25 25 H 1.09003 * 109.46753 * 168.64570 * 4 3 2 26 26 H 0.97004 * 119.99774 * 180.02562 * 8 7 5 27 27 H 1.08995 * 109.47605 * 306.04616 * 13 3 2 28 28 H 1.09002 * 109.46662 * 186.04622 * 13 3 2 29 29 H 1.07998 * 126.58232 * 0.03547 * 15 14 13 30 30 H 1.07993 * 126.58094 * 179.97438 * 16 15 14 31 31 H 1.07998 * 125.78844 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6020 2.0910 -1.2186 5 6 2.3753 1.5588 -2.3975 6 1 3.0898 0.7608 -2.2589 7 6 2.1706 2.0905 -3.6531 8 7 2.8458 1.6263 -4.6818 9 14 0.9354 3.4711 -3.8927 10 1 1.6161 4.7797 -3.7212 11 1 0.3591 3.3882 -5.2588 12 1 -0.1512 3.3430 -2.8885 13 6 1.5734 2.1012 1.2025 14 6 2.2209 1.4920 2.4193 15 6 3.3974 1.8649 2.9541 16 6 3.6190 1.0341 4.0764 17 6 2.5648 0.2027 4.1599 18 8 1.7186 0.4883 3.1569 19 1 -0.3633 -1.0276 -0.0092 20 1 -0.3633 0.5059 0.8944 21 1 -0.3632 0.5217 -0.8854 22 1 1.8935 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 0.5359 1.9337 -1.3824 25 1 1.7990 3.1572 -1.1063 26 1 2.7021 2.0007 -5.5651 27 1 0.4898 2.0236 1.2904 28 1 1.8576 3.1507 1.1267 29 1 4.0476 2.6493 2.5958 30 1 4.4714 1.0611 4.7390 31 1 2.4209 -0.5614 4.9094 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042223186.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:31 Heat of formation + Delta-G solvation = 2.041585 kcal Electronic energy + Delta-G solvation = -13797.610271 eV Core-core repulsion = 11466.290170 eV Total energy + Delta-G solvation = -2331.320101 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.39800 -39.00418 -34.75069 -33.87725 -32.04933 -31.26755 -28.84110 -26.17577 -24.65460 -22.55621 -21.82406 -20.73456 -18.91936 -18.01605 -17.28614 -16.77996 -16.30879 -15.94686 -15.49115 -14.68543 -14.50162 -13.96929 -13.66260 -13.53445 -13.38312 -13.31725 -12.82938 -12.61195 -12.41831 -12.22205 -11.89265 -11.62285 -11.47052 -10.76332 -10.74271 -9.37815 -8.97521 -8.26061 -6.29172 0.86892 1.36947 1.38312 1.48760 1.79049 2.18099 2.36199 3.07155 3.34978 3.82840 4.14537 4.21643 4.23115 4.35922 4.43304 4.56384 4.59599 4.72406 4.89727 5.00374 5.04101 5.12846 5.19009 5.28296 5.39484 5.55231 5.69906 5.97223 6.25558 6.36825 6.62327 6.76572 7.33633 8.90969 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.050052 B = 0.007866 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.289452 B = 3558.806914 C = 3653.916136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.063 3.937 3 N -0.540 5.540 4 C 0.168 3.832 5 C -0.513 4.513 6 H 0.032 0.968 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.947 3.053 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.246 1.246 13 C 0.126 3.874 14 C -0.015 4.015 15 C -0.212 4.212 16 C -0.225 4.225 17 C -0.045 4.045 18 O -0.192 6.192 19 H 0.071 0.929 20 H 0.063 0.937 21 H 0.047 0.953 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.006 0.994 25 H 0.032 0.968 26 H 0.266 0.734 27 H 0.057 0.943 28 H 0.107 0.893 29 H 0.148 0.852 30 H 0.169 0.831 31 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 0.225 16.866 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.065 4.065 3 N -0.264 5.264 4 C 0.042 3.958 5 C -0.552 4.552 6 H 0.051 0.949 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.770 3.230 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.170 1.170 13 C -0.002 4.002 14 C -0.065 4.065 15 C -0.232 4.232 16 C -0.244 4.244 17 C -0.112 4.112 18 O -0.088 6.088 19 H 0.090 0.910 20 H 0.081 0.919 21 H 0.066 0.934 22 H 0.071 0.929 23 H 0.085 0.915 24 H 0.024 0.976 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.166 0.834 30 H 0.186 0.814 31 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.268 0.100 16.623 17.162 hybrid contribution -0.642 0.441 -0.665 1.024 sum -4.910 0.541 15.958 16.705 Atomic orbital electron populations 1.22275 0.97247 1.02789 1.01429 1.21909 0.93752 0.90012 1.00835 1.62100 1.60131 1.02716 1.01418 1.20025 0.94269 0.94173 0.87382 1.21225 1.22484 1.19452 0.91996 0.94934 1.25852 0.98105 0.99715 0.95345 1.70060 1.43864 1.44747 1.00477 0.85717 0.79831 0.79401 0.78026 1.18945 1.20933 1.16994 1.20611 0.97606 0.97463 0.84478 1.22326 0.96411 0.92006 0.95772 1.21832 0.97589 1.04757 0.98981 1.22133 1.02130 0.99192 1.00963 1.24786 0.90227 1.03035 0.93162 1.84010 1.45486 1.44295 1.35053 0.90961 0.91853 0.93401 0.92944 0.91505 0.97640 0.94988 0.92481 0.92520 0.87540 0.83444 0.81352 0.74502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.01 9.27 71.98 0.67 -5.34 16 2 C 0.06 2.49 5.74 86.30 0.50 2.98 16 3 N -0.54 -22.65 4.65 -905.36 -4.21 -26.86 16 4 C 0.17 7.92 3.66 85.55 0.31 8.24 16 5 C -0.51 -29.85 9.12 25.60 0.23 -29.62 16 6 H 0.03 2.14 7.68 -2.91 -0.02 2.12 16 7 C 0.01 0.39 5.47 84.66 0.46 0.86 16 8 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 9 Si 0.95 43.53 27.44 68.60 1.88 45.41 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.25 -10.39 6.58 99.48 0.65 -9.74 16 13 C 0.13 4.22 5.27 85.56 0.45 4.67 16 14 C -0.02 -0.48 5.88 24.83 0.15 -0.33 16 15 C -0.21 -6.25 10.81 22.19 0.24 -6.01 16 16 C -0.23 -5.38 10.91 22.19 0.24 -5.14 16 17 C -0.05 -1.01 12.09 66.97 0.81 -0.20 16 18 O -0.19 -5.61 10.02 -2.56 -0.03 -5.63 16 19 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 20 H 0.06 1.92 6.33 -2.39 -0.02 1.90 16 21 H 0.05 1.76 6.22 -2.39 -0.01 1.75 16 22 H 0.05 2.39 7.15 -2.39 -0.02 2.37 16 23 H 0.07 2.48 6.75 -2.39 -0.02 2.46 16 24 H 0.01 0.28 5.02 -2.39 -0.01 0.27 16 25 H 0.03 1.46 7.18 -2.39 -0.02 1.44 16 26 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 27 H 0.06 1.77 6.05 -2.39 -0.01 1.76 16 28 H 0.11 3.31 7.87 -2.39 -0.02 3.29 16 29 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 30 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 31 H 0.24 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -68.08 255.96 3.06 -65.01 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.06 Total: 11.54 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 4.06 Total: -29.90 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -3.91 Total: -86.44 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.03 Total: -5.63 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.88 Total: 45.41 kcal Total: -68.08 3.06 -65.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042223186.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.056 kcal (2) G-P(sol) polarization free energy of solvation -68.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds