Wall clock time and date at job start Sun Mar 29 2020 22:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00098 * 2 1 4 4 H 1.48506 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47216 * 299.99991 * 3 2 1 6 6 H 1.48505 * 109.47196 * 60.00250 * 3 2 1 7 7 C 1.37872 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99993 * 179.72834 * 7 2 1 9 9 C 1.50696 * 120.00108 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47419 * 179.72386 * 9 7 2 11 11 N 1.46897 * 109.47033 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99507 * 174.54405 * 11 10 9 13 13 C 1.53007 * 109.47056 * 135.55756 * 12 11 10 14 14 C 1.52999 * 117.49633 * 6.29880 * 13 12 11 15 15 C 1.53001 * 117.49388 * 297.64326 * 13 12 11 16 16 C 1.52999 * 109.47182 * 255.55176 * 12 11 10 17 17 C 1.52998 * 117.50221 * 123.62954 * 16 12 11 18 18 C 1.53000 * 117.49819 * 54.97191 * 16 12 11 19 19 H 0.97008 * 119.99806 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47367 * 299.72188 * 9 7 2 21 21 H 1.09000 * 109.47486 * 59.72126 * 9 7 2 22 22 H 1.08998 * 109.46689 * 300.00217 * 10 9 7 23 23 H 1.09003 * 109.46969 * 59.99979 * 10 9 7 24 24 H 1.00898 * 111.00256 * 50.59585 * 11 10 9 25 25 H 1.08995 * 109.47516 * 15.55563 * 12 11 10 26 26 H 1.08997 * 115.54893 * 151.97625 * 13 12 11 27 27 H 1.09000 * 117.50433 * 0.02562 * 14 13 12 28 28 H 1.09002 * 117.49308 * 145.02499 * 14 13 12 29 29 H 1.09006 * 117.49428 * 214.98047 * 15 13 12 30 30 H 1.08999 * 117.50063 * 359.97438 * 15 13 12 31 31 H 1.09005 * 115.55485 * 269.30769 * 16 12 11 32 32 H 1.09006 * 117.49410 * 0.02562 * 17 16 12 33 33 H 1.08993 * 117.50032 * 145.01951 * 17 16 12 34 34 H 1.09001 * 117.50403 * 214.98365 * 18 16 12 35 35 H 1.09005 * 117.49986 * 0.02562 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 -0.0039 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 -0.0058 11 7 1.5105 -4.9342 -0.0052 12 6 2.4291 -6.0725 -0.1415 13 6 2.0365 -7.1667 0.8534 14 6 0.7482 -6.9647 1.6535 15 6 2.1076 -6.8254 2.3431 16 6 2.3481 -6.6255 -1.5658 17 6 3.6475 -6.6990 -2.3701 18 6 2.5902 -5.6482 -2.7178 19 1 -0.4850 0.8401 -0.0004 20 1 0.6277 -2.5588 0.8927 21 1 0.6209 -2.5549 -0.8872 22 1 2.8684 -3.6024 -0.8980 23 1 2.8752 -3.6063 0.8820 24 1 0.8089 -4.9470 -0.7301 25 1 3.4479 -5.7439 0.0633 26 1 2.2909 -8.1844 0.5574 27 1 0.1800 -6.0525 1.4710 28 1 0.1552 -7.8497 1.8844 29 1 2.4085 -7.6188 3.0274 30 1 2.4345 -5.8216 2.6145 31 1 1.6139 -7.4159 -1.7223 32 1 4.5602 -6.3537 -1.8843 33 1 3.7682 -7.5375 -3.0558 34 1 2.0157 -5.7958 -3.6323 35 1 2.8076 -4.6114 -2.4611 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042237283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:10 Heat of formation + Delta-G solvation = 36.708555 kcal Electronic energy + Delta-G solvation = -13773.239977 eV Core-core repulsion = 11579.256244 eV Total energy + Delta-G solvation = -2193.983734 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.84064 -36.07590 -34.50627 -32.54996 -29.46543 -26.39630 -23.65008 -22.23873 -22.03613 -21.01662 -20.47229 -19.42313 -16.36513 -16.16109 -15.09790 -14.82847 -14.40363 -14.09375 -13.42828 -13.22180 -12.58209 -12.19481 -11.58692 -11.37174 -11.27678 -11.04643 -11.00200 -10.92764 -10.53195 -10.31178 -10.27773 -10.03810 -9.75673 -9.53832 -9.30272 -9.11157 -8.35425 -7.70067 -5.99511 -4.01879 3.31219 3.38664 3.42617 3.86471 4.15219 4.45206 4.72373 4.83069 5.02138 5.19789 5.28988 5.35605 5.36650 5.42287 5.55381 5.72596 5.92581 5.93674 6.00749 6.03402 6.19016 6.24913 6.35669 6.40417 6.52264 6.56562 6.78937 7.00283 7.54158 7.75541 7.86063 8.01503 8.10683 8.44746 9.05618 9.62027 11.11882 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.007226 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.227784 B = 3873.906759 C = 4361.907978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.065 3.935 11 N -0.681 5.681 12 C 0.143 3.857 13 C -0.147 4.147 14 C -0.163 4.163 15 C -0.176 4.176 16 C -0.170 4.170 17 C -0.179 4.179 18 C -0.182 4.182 19 H 0.260 0.740 20 H 0.024 0.976 21 H 0.013 0.987 22 H 0.017 0.983 23 H 0.055 0.945 24 H 0.340 0.660 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.116 0.884 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 -13.673 -1.532 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.311 5.311 12 C 0.033 3.967 13 C -0.166 4.166 14 C -0.200 4.200 15 C -0.213 4.213 16 C -0.189 4.189 17 C -0.217 4.217 18 C -0.219 4.219 19 H 0.069 0.931 20 H 0.043 0.957 21 H 0.032 0.968 22 H 0.035 0.965 23 H 0.074 0.926 24 H 0.159 0.841 25 H 0.087 0.913 26 H 0.113 0.887 27 H 0.134 0.866 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.121 0.879 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.102 -13.574 -0.831 14.205 hybrid contribution 0.709 0.965 -1.007 1.564 sum 4.811 -12.609 -1.838 13.621 Atomic orbital electron populations 1.69984 1.06011 1.26444 1.50785 1.24999 0.94833 0.99197 0.95334 0.86552 0.80089 0.83863 0.77586 1.19794 1.21038 1.20969 1.21208 0.92981 0.91037 1.50672 0.92784 1.19082 0.94024 0.90568 0.97625 1.22265 0.97052 0.88600 0.98354 1.60690 1.15187 1.02031 1.53146 1.20601 0.96178 0.90503 0.89440 1.22294 1.03717 0.98160 0.92402 1.22908 0.90626 1.03374 1.03071 1.22810 1.02060 1.02323 0.94154 1.22992 0.99991 1.02494 0.93426 1.22969 0.93433 1.01607 1.03706 1.23059 1.02879 0.96846 0.99115 0.93068 0.95742 0.96837 0.96534 0.92637 0.84141 0.91316 0.88746 0.86568 0.90549 0.90106 0.88710 0.87904 0.88995 0.89268 0.88973 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.63 5.18 -27.88 -0.14 0.49 16 10 C 0.07 1.36 5.21 -3.82 -0.02 1.34 16 11 N -0.68 -11.88 4.44 -106.72 -0.47 -12.35 16 12 C 0.14 2.11 2.71 -67.71 -0.18 1.93 16 13 C -0.15 -1.98 5.68 -90.62 -0.51 -2.50 16 14 C -0.16 -2.27 9.85 -26.70 -0.26 -2.53 16 15 C -0.18 -2.43 10.20 -26.69 -0.27 -2.70 16 16 C -0.17 -2.22 5.00 -90.62 -0.45 -2.67 16 17 C -0.18 -2.15 10.18 -26.70 -0.27 -2.42 16 18 C -0.18 -2.46 9.82 -26.70 -0.26 -2.72 16 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 20 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 21 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.02 0.34 6.16 -51.93 -0.32 0.02 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.34 5.97 7.96 -39.29 -0.31 5.66 16 25 H 0.07 1.08 7.34 -51.93 -0.38 0.70 16 26 H 0.09 1.15 8.10 -51.93 -0.42 0.73 16 27 H 0.12 1.87 6.92 -51.93 -0.36 1.51 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.10 1.27 8.07 -51.93 -0.42 0.85 16 32 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.61 6.05 -51.93 -0.31 1.29 16 LS Contribution 286.81 15.07 4.32 4.32 Total: -1.00 -28.94 286.81 -9.10 -38.04 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -5.87 Total: 4.81 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -2.80 Total: -25.33 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.26 Total: -38.61 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.94 -9.10 -38.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042237283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.748 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds