Wall clock time and date at job start Sun Mar 29 2020 22:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00098 * 2 1 4 4 H 1.48506 * 109.47083 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47216 * 299.99991 * 3 2 1 6 6 H 1.48505 * 109.47196 * 60.00250 * 3 2 1 7 7 C 1.37872 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99993 * 179.72834 * 7 2 1 9 9 C 1.50696 * 120.00108 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47419 * 179.72386 * 9 7 2 11 11 N 1.46897 * 109.47033 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99507 * 174.54405 * 11 10 9 13 13 C 1.53007 * 109.47056 * 135.55756 * 12 11 10 14 14 C 1.52999 * 117.49633 * 6.29880 * 13 12 11 15 15 C 1.53001 * 117.49388 * 297.64326 * 13 12 11 16 16 C 1.52999 * 109.47182 * 255.55176 * 12 11 10 17 17 C 1.52998 * 117.50221 * 123.62954 * 16 12 11 18 18 C 1.53000 * 117.49819 * 54.97191 * 16 12 11 19 19 H 0.97008 * 119.99806 * 0.02562 * 1 2 3 20 20 H 1.08998 * 109.47367 * 299.72188 * 9 7 2 21 21 H 1.09000 * 109.47486 * 59.72126 * 9 7 2 22 22 H 1.08998 * 109.46689 * 300.00217 * 10 9 7 23 23 H 1.09003 * 109.46969 * 59.99979 * 10 9 7 24 24 H 1.00898 * 111.00256 * 50.59585 * 11 10 9 25 25 H 1.08995 * 109.47516 * 15.55563 * 12 11 10 26 26 H 1.08997 * 115.54893 * 151.97625 * 13 12 11 27 27 H 1.09000 * 117.50433 * 0.02562 * 14 13 12 28 28 H 1.09002 * 117.49308 * 145.02499 * 14 13 12 29 29 H 1.09006 * 117.49428 * 214.98047 * 15 13 12 30 30 H 1.08999 * 117.50063 * 359.97438 * 15 13 12 31 31 H 1.09005 * 115.55485 * 269.30769 * 16 12 11 32 32 H 1.09006 * 117.49410 * 0.02562 * 17 16 12 33 33 H 1.08993 * 117.50032 * 145.01951 * 17 16 12 34 34 H 1.09001 * 117.50403 * 214.98365 * 18 16 12 35 35 H 1.09005 * 117.49986 * 0.02562 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 -0.0039 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 -0.0058 11 7 1.5105 -4.9342 -0.0052 12 6 2.4291 -6.0725 -0.1415 13 6 2.0365 -7.1667 0.8534 14 6 0.7482 -6.9647 1.6535 15 6 2.1076 -6.8254 2.3431 16 6 2.3481 -6.6255 -1.5658 17 6 3.6475 -6.6990 -2.3701 18 6 2.5902 -5.6482 -2.7178 19 1 -0.4850 0.8401 -0.0004 20 1 0.6277 -2.5588 0.8927 21 1 0.6209 -2.5549 -0.8872 22 1 2.8684 -3.6024 -0.8980 23 1 2.8752 -3.6063 0.8820 24 1 0.8089 -4.9470 -0.7301 25 1 3.4479 -5.7439 0.0633 26 1 2.2909 -8.1844 0.5574 27 1 0.1800 -6.0525 1.4710 28 1 0.1552 -7.8497 1.8844 29 1 2.4085 -7.6188 3.0274 30 1 2.4345 -5.8216 2.6145 31 1 1.6139 -7.4159 -1.7223 32 1 4.5602 -6.3537 -1.8843 33 1 3.7682 -7.5375 -3.0558 34 1 2.0157 -5.7958 -3.6323 35 1 2.8076 -4.6114 -2.4611 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042237283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:10 Heat of formation + Delta-G solvation = 20.719440 kcal Electronic energy + Delta-G solvation = -13773.933317 eV Core-core repulsion = 11579.256244 eV Total energy + Delta-G solvation = -2194.677074 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.03548 -37.14091 -36.24950 -34.50616 -31.27282 -27.96829 -25.52776 -23.33747 -23.15841 -22.40733 -21.92714 -20.65216 -18.49357 -17.41771 -16.65878 -16.23457 -15.84584 -15.52183 -15.03870 -14.52326 -14.22036 -13.98475 -13.19300 -12.91252 -12.68558 -12.57149 -12.44449 -12.30440 -12.13679 -11.96133 -11.51662 -11.37511 -11.30740 -11.04737 -10.85746 -10.64112 -10.58428 -9.15655 -8.21788 -6.33147 1.38622 1.39170 1.52328 2.38904 2.79732 3.05004 3.11631 3.50374 3.64984 3.94980 4.14569 4.19661 4.24834 4.32408 4.43501 4.51278 4.59899 4.74906 4.78610 4.90061 4.96025 5.01349 5.07684 5.18837 5.24469 5.31709 5.39497 5.46407 5.62325 5.68019 5.79027 6.15650 6.32325 6.59590 6.84265 7.36175 8.90421 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.007226 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.227784 B = 3873.906759 C = 4361.907978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.034 3.966 10 C 0.087 3.913 11 N -0.680 5.680 12 C 0.142 3.858 13 C -0.139 4.139 14 C -0.166 4.166 15 C -0.179 4.179 16 C -0.169 4.169 17 C -0.160 4.160 18 C -0.197 4.197 19 H 0.264 0.736 20 H -0.007 1.007 21 H -0.009 1.009 22 H 0.019 0.981 23 H 0.049 0.951 24 H 0.339 0.661 25 H 0.059 0.941 26 H 0.120 0.880 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.477 -14.826 -1.905 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.042 4.042 11 N -0.310 5.310 12 C 0.032 3.968 13 C -0.158 4.158 14 C -0.204 4.204 15 C -0.216 4.216 16 C -0.188 4.188 17 C -0.198 4.198 18 C -0.234 4.234 19 H 0.073 0.927 20 H 0.011 0.989 21 H 0.010 0.990 22 H 0.037 0.963 23 H 0.067 0.933 24 H 0.158 0.842 25 H 0.077 0.923 26 H 0.138 0.862 27 H 0.107 0.893 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.109 0.891 33 H 0.132 0.868 34 H 0.122 0.878 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.312 -14.746 -1.203 15.719 hybrid contribution 0.305 1.298 -0.882 1.599 sum 5.617 -13.448 -2.086 14.722 Atomic orbital electron populations 1.70114 1.07766 1.27719 1.51454 1.25959 0.95770 1.03312 0.94630 0.85395 0.79001 0.78741 0.77880 1.18695 1.20201 1.20294 1.21623 0.93411 0.92349 1.50836 0.92423 1.18904 0.94221 0.92309 0.94916 1.21844 0.95605 0.88628 0.98083 1.60630 1.15492 1.01506 1.53381 1.20653 0.94906 0.89832 0.91425 1.22337 1.03110 0.98655 0.91683 1.22863 0.90777 1.03143 1.03571 1.22827 1.01938 1.01853 0.95003 1.22923 1.01480 1.02558 0.91880 1.23053 0.92555 1.01214 1.02962 1.23010 1.04700 0.95749 0.99920 0.92734 0.98881 0.99047 0.96266 0.93295 0.84235 0.92307 0.86166 0.89268 0.88317 0.87720 0.91158 0.86400 0.89124 0.86797 0.87819 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.40 13.29 21.45 0.28 -57.11 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 4 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.54 -31.59 9.11 25.60 0.23 -31.36 16 8 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 9 C 0.03 1.84 5.18 29.85 0.15 1.99 16 10 C 0.09 3.75 5.21 86.31 0.45 4.20 16 11 N -0.68 -24.18 4.44 -491.55 -2.18 -26.37 16 12 C 0.14 4.05 2.71 44.92 0.12 4.17 16 13 C -0.14 -3.48 5.68 -10.79 -0.06 -3.54 16 14 C -0.17 -4.43 9.85 30.62 0.30 -4.13 16 15 C -0.18 -4.70 10.20 30.62 0.31 -4.39 16 16 C -0.17 -4.09 5.00 -10.79 -0.05 -4.14 16 17 C -0.16 -3.43 10.18 30.62 0.31 -3.12 16 18 C -0.20 -5.11 9.82 30.62 0.30 -4.81 16 19 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 20 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 21 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 22 H 0.02 0.82 6.16 -2.39 -0.01 0.80 16 23 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 24 H 0.34 12.20 7.96 -89.70 -0.71 11.49 16 25 H 0.06 1.81 7.34 -2.39 -0.02 1.79 16 26 H 0.12 2.46 8.10 -2.39 -0.02 2.44 16 27 H 0.09 2.89 6.92 -2.39 -0.02 2.88 16 28 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.12 2.55 8.07 -2.38 -0.02 2.53 16 32 H 0.09 1.98 8.03 -2.38 -0.02 1.96 16 33 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.07 2.35 6.05 -2.38 -0.01 2.34 16 Total: -1.00 -62.85 286.81 3.00 -59.85 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.34 Total: 21.34 kcal Atomic # 6 Polarization: -47.12 SS G_CDS: 2.53 Total: -44.59 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -1.90 Total: -83.48 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -62.85 3.00 -59.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042237283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.573 kcal (2) G-P(sol) polarization free energy of solvation -62.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds