Wall clock time and date at job start Sun Mar 29 2020 21:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.34306 * 125.79398 * 2 1 4 4 C 1.34295 * 109.47698 * 180.23795 * 3 2 1 5 5 C 1.34513 * 108.42441 * 359.77087 * 4 3 2 6 6 C 1.34515 * 125.78830 * 179.83931 * 2 1 3 7 7 C 1.50696 * 126.58014 * 0.03393 * 6 2 1 8 8 N 1.46898 * 109.47473 * 285.10235 * 7 6 2 9 9 C 1.46904 * 110.99886 * 288.06930 * 8 7 6 10 10 C 1.46902 * 111.00417 * 164.11283 * 8 7 6 11 11 C 1.50692 * 109.47240 * 189.99879 * 10 8 7 12 12 H 1.08009 * 120.00039 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00317 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99795 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00456 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47376 * 89.99813 * 15 13 11 17 17 H 1.48498 * 109.47246 * 210.00011 * 15 13 11 18 18 H 1.48501 * 109.47079 * 329.99655 * 15 13 11 19 19 H 1.09005 * 109.47174 * 264.98239 * 1 2 3 20 20 H 1.09001 * 109.47652 * 24.98169 * 1 2 3 21 21 H 1.09000 * 109.47754 * 144.98023 * 1 2 3 22 22 H 1.08000 * 125.78660 * 179.75107 * 4 3 2 23 23 H 1.08002 * 126.58057 * 179.97438 * 5 4 3 24 24 H 1.09008 * 109.47350 * 45.10193 * 7 6 2 25 25 H 1.08999 * 109.47143 * 165.09944 * 7 6 2 26 26 H 1.08998 * 109.46897 * 56.37715 * 9 8 7 27 27 H 1.08992 * 109.47214 * 176.38415 * 9 8 7 28 28 H 1.09000 * 109.46807 * 296.38478 * 9 8 7 29 29 H 1.09001 * 109.46918 * 309.99868 * 10 8 7 30 30 H 1.09002 * 109.46951 * 69.99629 * 10 8 7 31 31 H 0.96995 * 120.00124 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2925 1.0894 0.0000 4 6 3.5813 0.7121 -0.0053 5 6 3.6308 -0.6321 -0.0036 6 6 2.2936 -1.0912 0.0031 7 6 1.8371 -2.5273 0.0064 8 7 1.3442 -2.8815 1.3441 9 6 2.4533 -2.9951 2.3007 10 6 0.5549 -4.1198 1.3037 11 6 -0.1338 -4.3200 2.6290 12 1 0.0010 -3.5992 3.4220 13 6 -0.9360 -5.4233 2.8294 14 7 -1.1005 -6.3008 1.8636 15 14 -1.7903 -5.6711 4.4719 16 1 -3.1231 -5.0171 4.4404 17 1 -1.9579 -7.1242 4.7285 18 1 -0.9690 -5.0692 5.5528 19 1 -0.3634 -0.0899 1.0238 20 1 -0.3634 0.9315 -0.4340 21 1 -0.3634 -0.8416 -0.5897 22 1 4.4335 1.3755 -0.0103 23 1 4.5211 -1.2434 -0.0071 24 1 1.0361 -2.6557 -0.7217 25 1 2.6736 -3.1750 -0.2559 26 1 3.0177 -2.0627 2.3151 27 1 2.0559 -3.1947 3.2958 28 1 3.1094 -3.8123 2.0009 29 1 -0.1921 -4.0488 0.5131 30 1 1.2145 -4.9647 1.1056 31 1 -1.6651 -7.0768 2.0044 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042375731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:35 Heat of formation + Delta-G solvation = 12.839231 kcal Electronic energy + Delta-G solvation = -13651.200628 eV Core-core repulsion = 11320.348749 eV Total energy + Delta-G solvation = -2330.851880 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.24695 -36.65093 -33.26398 -32.12789 -31.49390 -27.81117 -26.85620 -25.60954 -23.59824 -21.11719 -20.62227 -19.00999 -16.74904 -16.13374 -15.86866 -14.80799 -14.45948 -13.96966 -13.85352 -13.15449 -12.81545 -12.53647 -12.46456 -11.96081 -11.90330 -11.46148 -11.18840 -10.95952 -10.81477 -10.58248 -10.44347 -9.83316 -9.38744 -9.18172 -8.41994 -7.96712 -7.18892 -6.01249 -4.02334 2.06602 2.92656 3.33074 3.33373 3.38927 3.42914 4.44686 5.00061 5.19425 5.27078 5.33904 5.40202 5.69157 5.85179 5.91369 6.10277 6.18250 6.18895 6.32334 6.34540 6.48380 6.58272 6.81048 6.89128 7.30381 7.37743 7.50636 7.82827 8.11025 8.24892 8.58455 9.05765 9.61868 11.09671 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051513 B = 0.007187 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.419542 B = 3895.153204 C = 4007.307221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.004 3.996 3 O -0.184 6.184 4 C -0.061 4.061 5 C -0.202 4.202 6 C -0.164 4.164 7 C 0.121 3.879 8 N -0.535 5.535 9 C 0.042 3.958 10 C 0.192 3.808 11 C -0.505 4.505 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.274 1.274 19 H 0.088 0.912 20 H 0.063 0.937 21 H 0.087 0.913 22 H 0.196 0.804 23 H 0.141 0.859 24 H 0.074 0.926 25 H 0.030 0.970 26 H 0.044 0.956 27 H 0.071 0.929 28 H 0.009 0.991 29 H 0.030 0.970 30 H -0.010 1.010 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.553 10.883 -3.937 13.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.047 4.047 3 O -0.081 6.081 4 C -0.128 4.128 5 C -0.222 4.222 6 C -0.166 4.166 7 C -0.007 4.007 8 N -0.259 5.259 9 C -0.107 4.107 10 C 0.067 3.933 11 C -0.544 4.544 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.540 5.540 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.199 1.199 19 H 0.106 0.894 20 H 0.082 0.918 21 H 0.106 0.894 22 H 0.213 0.787 23 H 0.159 0.841 24 H 0.092 0.908 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.028 0.972 29 H 0.048 0.952 30 H 0.008 0.992 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.034 11.359 -3.815 13.416 hybrid contribution 0.373 -1.111 0.601 1.317 sum 6.407 10.248 -3.214 12.506 Atomic orbital electron populations 1.20237 0.84868 1.02689 1.04324 1.22288 0.93967 0.83437 1.04970 1.83968 1.16730 1.35268 1.72101 1.23746 0.84411 0.95813 1.08871 1.21718 0.97809 0.94682 1.07987 1.20240 0.92179 0.96425 1.07720 1.20356 0.97995 0.89214 0.93132 1.62092 1.21421 1.37891 1.04515 1.22161 0.92552 0.97921 0.98025 1.19759 0.91777 0.83728 0.98044 1.21167 1.27637 1.06926 0.98644 0.91882 1.24987 0.96784 0.95894 0.96981 1.69959 1.39216 1.12474 1.32309 0.86504 0.79944 0.77071 0.83923 1.20624 1.21352 1.19901 0.89353 0.91779 0.89393 0.78744 0.84144 0.90788 0.95189 0.93691 0.91072 0.97235 0.95234 0.99213 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.16 36.00 0.37 -0.57 16 2 C 0.00 0.06 7.32 -35.63 -0.26 -0.20 16 3 O -0.18 -2.85 10.65 5.72 0.06 -2.79 16 4 C -0.06 -0.81 12.09 29.42 0.36 -0.46 16 5 C -0.20 -3.01 10.57 -39.70 -0.42 -3.43 16 6 C -0.16 -2.82 4.85 -104.74 -0.51 -3.33 16 7 C 0.12 2.31 5.14 -4.98 -0.03 2.28 16 8 N -0.53 -11.84 4.70 -245.83 -1.16 -12.99 16 9 C 0.04 0.87 9.19 60.07 0.55 1.42 16 10 C 0.19 5.03 4.71 -4.98 -0.02 5.01 16 11 C -0.51 -14.26 8.51 -34.44 -0.29 -14.55 16 12 H 0.06 1.77 7.11 -52.48 -0.37 1.40 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 14 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 15 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.09 1.26 7.68 -51.93 -0.40 0.87 16 22 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 23 H 0.14 1.84 8.06 -52.49 -0.42 1.42 16 24 H 0.07 1.39 7.44 -51.92 -0.39 1.00 16 25 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 26 H 0.04 0.84 7.15 -51.93 -0.37 0.47 16 27 H 0.07 1.55 6.85 -51.93 -0.36 1.19 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.03 0.81 7.86 -51.93 -0.41 0.41 16 30 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 266.62 15.07 4.02 4.02 Total: -1.00 -30.77 266.62 -6.10 -36.86 By element: Atomic # 1 Polarization: 1.01 SS G_CDS: -4.38 Total: -3.37 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.36 Total: -12.36 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: -0.42 Total: -39.06 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: 0.06 Total: -2.79 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.77 -6.10 -36.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042375731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.704 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds