Wall clock time and date at job start Sun Mar 29 2020 21:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.34306 * 125.79398 * 2 1 4 4 C 1.34295 * 109.47698 * 180.23795 * 3 2 1 5 5 C 1.34513 * 108.42441 * 359.77087 * 4 3 2 6 6 C 1.34515 * 125.78830 * 179.83931 * 2 1 3 7 7 C 1.50696 * 126.58014 * 0.03393 * 6 2 1 8 8 N 1.46898 * 109.47473 * 285.10235 * 7 6 2 9 9 C 1.46904 * 110.99886 * 288.06930 * 8 7 6 10 10 C 1.46902 * 111.00417 * 164.11283 * 8 7 6 11 11 C 1.50692 * 109.47240 * 189.99879 * 10 8 7 12 12 H 1.08009 * 120.00039 * 0.02562 * 11 10 8 13 13 C 1.37875 * 120.00317 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99795 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00456 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47376 * 89.99813 * 15 13 11 17 17 H 1.48498 * 109.47246 * 210.00011 * 15 13 11 18 18 H 1.48501 * 109.47079 * 329.99655 * 15 13 11 19 19 H 1.09005 * 109.47174 * 264.98239 * 1 2 3 20 20 H 1.09001 * 109.47652 * 24.98169 * 1 2 3 21 21 H 1.09000 * 109.47754 * 144.98023 * 1 2 3 22 22 H 1.08000 * 125.78660 * 179.75107 * 4 3 2 23 23 H 1.08002 * 126.58057 * 179.97438 * 5 4 3 24 24 H 1.09008 * 109.47350 * 45.10193 * 7 6 2 25 25 H 1.08999 * 109.47143 * 165.09944 * 7 6 2 26 26 H 1.08998 * 109.46897 * 56.37715 * 9 8 7 27 27 H 1.08992 * 109.47214 * 176.38415 * 9 8 7 28 28 H 1.09000 * 109.46807 * 296.38478 * 9 8 7 29 29 H 1.09001 * 109.46918 * 309.99868 * 10 8 7 30 30 H 1.09002 * 109.46951 * 69.99629 * 10 8 7 31 31 H 0.96995 * 120.00124 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2925 1.0894 0.0000 4 6 3.5813 0.7121 -0.0053 5 6 3.6308 -0.6321 -0.0036 6 6 2.2936 -1.0912 0.0031 7 6 1.8371 -2.5273 0.0064 8 7 1.3442 -2.8815 1.3441 9 6 2.4533 -2.9951 2.3007 10 6 0.5549 -4.1198 1.3037 11 6 -0.1338 -4.3200 2.6290 12 1 0.0010 -3.5992 3.4220 13 6 -0.9360 -5.4233 2.8294 14 7 -1.1005 -6.3008 1.8636 15 14 -1.7903 -5.6711 4.4719 16 1 -3.1231 -5.0171 4.4404 17 1 -1.9579 -7.1242 4.7285 18 1 -0.9690 -5.0692 5.5528 19 1 -0.3634 -0.0899 1.0238 20 1 -0.3634 0.9315 -0.4340 21 1 -0.3634 -0.8416 -0.5897 22 1 4.4335 1.3755 -0.0103 23 1 4.5211 -1.2434 -0.0071 24 1 1.0361 -2.6557 -0.7217 25 1 2.6736 -3.1750 -0.2559 26 1 3.0177 -2.0627 2.3151 27 1 2.0559 -3.1947 3.2958 28 1 3.1094 -3.8123 2.0009 29 1 -0.1921 -4.0488 0.5131 30 1 1.2145 -4.9647 1.1056 31 1 -1.6651 -7.0768 2.0044 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042375731.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:34 Heat of formation + Delta-G solvation = -7.187615 kcal Electronic energy + Delta-G solvation = -13652.069058 eV Core-core repulsion = 11320.348749 eV Total energy + Delta-G solvation = -2331.720309 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.42570 -38.39089 -35.02539 -33.87480 -32.63276 -29.60418 -28.57010 -27.00858 -25.42479 -22.52146 -22.23296 -20.30847 -18.53694 -17.68912 -17.14216 -16.69240 -16.06883 -15.70227 -15.34928 -14.76384 -14.19142 -13.91132 -13.70332 -13.56116 -13.41126 -13.12352 -12.95719 -12.63714 -12.57273 -12.29376 -12.26408 -11.80357 -11.32147 -10.62823 -10.55298 -9.17542 -9.01040 -8.19533 -6.29597 0.90815 1.42076 1.43440 1.54423 1.70321 2.22730 2.41741 3.12956 3.46652 3.95049 4.00879 4.17473 4.49995 4.50476 4.54848 4.66975 4.72152 4.81917 4.96300 4.99998 5.05223 5.17182 5.21197 5.30429 5.45716 5.64928 5.68055 6.04794 6.30715 6.34887 6.62668 6.86528 7.40151 8.91549 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.051513 B = 0.007187 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.419542 B = 3895.153204 C = 4007.307221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.008 4.008 3 O -0.189 6.189 4 C -0.041 4.041 5 C -0.222 4.222 6 C -0.186 4.186 7 C 0.126 3.874 8 N -0.538 5.538 9 C 0.049 3.951 10 C 0.207 3.793 11 C -0.522 4.522 12 H 0.062 0.938 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.266 1.266 19 H 0.077 0.923 20 H 0.090 0.910 21 H 0.081 0.919 22 H 0.242 0.758 23 H 0.156 0.844 24 H 0.068 0.932 25 H 0.031 0.969 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.009 0.991 29 H 0.008 0.992 30 H -0.039 1.039 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.207 12.384 -3.211 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.059 4.059 3 O -0.085 6.085 4 C -0.107 4.107 5 C -0.241 4.241 6 C -0.188 4.188 7 C -0.002 4.002 8 N -0.263 5.263 9 C -0.100 4.100 10 C 0.081 3.919 11 C -0.560 4.560 12 H 0.080 0.920 13 C -0.196 4.196 14 N -0.575 5.575 15 Si 0.794 3.206 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.190 1.190 19 H 0.095 0.905 20 H 0.108 0.892 21 H 0.099 0.901 22 H 0.258 0.742 23 H 0.173 0.827 24 H 0.086 0.914 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.026 0.974 30 H -0.021 1.021 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.702 12.880 -3.095 14.846 hybrid contribution 0.244 -1.528 0.311 1.578 sum 6.946 11.352 -2.784 13.597 Atomic orbital electron populations 1.20233 0.84207 1.03854 1.03703 1.22504 0.94711 0.83605 1.05040 1.83992 1.17677 1.34875 1.72004 1.24620 0.84481 0.95998 1.05618 1.21935 0.97221 0.95782 1.09165 1.20175 0.93888 0.95195 1.09539 1.20285 0.97735 0.90930 0.91255 1.62023 1.22332 1.35297 1.06604 1.22103 0.92042 0.99054 0.96765 1.19421 0.91193 0.84546 0.96710 1.21449 1.28116 1.07204 0.99278 0.91992 1.25898 0.97365 0.95435 1.00868 1.70083 1.39918 1.13030 1.34518 0.85385 0.78879 0.77183 0.79184 1.19720 1.20779 1.19005 0.90463 0.89151 0.90075 0.74162 0.82660 0.91380 0.95111 0.91397 0.92510 0.97278 0.97409 1.02132 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.79 10.16 71.23 0.72 -1.07 16 2 C -0.01 -0.25 7.32 24.83 0.18 -0.07 16 3 O -0.19 -5.35 10.65 -2.44 -0.03 -5.38 16 4 C -0.04 -0.94 12.09 66.97 0.81 -0.13 16 5 C -0.22 -6.07 10.57 22.19 0.23 -5.84 16 6 C -0.19 -6.22 4.85 -19.94 -0.10 -6.32 16 7 C 0.13 4.84 5.14 85.56 0.44 5.28 16 8 N -0.54 -24.16 4.70 -931.66 -4.38 -28.54 16 9 C 0.05 2.00 9.19 127.69 1.17 3.18 16 10 C 0.21 11.24 4.71 85.55 0.40 11.65 16 11 C -0.52 -29.91 8.51 25.60 0.22 -29.69 16 12 H 0.06 3.49 7.11 -2.91 -0.02 3.47 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 15 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 19 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 20 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.08 2.36 7.68 -2.39 -0.02 2.34 16 22 H 0.24 3.03 8.06 -2.91 -0.02 3.00 16 23 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 24 H 0.07 2.64 7.44 -2.38 -0.02 2.62 16 25 H 0.03 1.16 8.05 -2.39 -0.02 1.15 16 26 H 0.07 2.46 7.15 -2.39 -0.02 2.44 16 27 H 0.06 2.47 6.85 -2.39 -0.02 2.45 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.01 0.45 7.86 -2.39 -0.02 0.43 16 30 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 31 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -65.82 266.62 3.55 -62.27 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: 1.10 Total: 3.82 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 4.55 Total: -22.43 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -4.09 Total: -84.79 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.03 Total: -5.38 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.82 3.55 -62.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042375731.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.081 kcal (2) G-P(sol) polarization free energy of solvation -65.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds