Wall clock time and date at job start Sun Mar 29 2020 21:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47066 * 2 1 4 4 C 1.53001 * 109.46848 * 120.00158 * 2 1 3 5 5 N 1.46504 * 109.46785 * 184.99775 * 4 2 1 6 6 C 1.34949 * 126.03473 * 124.99630 * 5 4 2 7 7 C 1.35318 * 107.74185 * 179.97438 * 6 5 4 8 8 C 1.39864 * 107.92114 * 0.02562 * 7 6 5 9 9 N 1.30829 * 108.20288 * 359.73649 * 8 7 6 10 10 N 1.46901 * 109.46830 * 239.99963 * 2 1 3 11 11 C 1.46895 * 110.99816 * 85.00098 * 10 2 1 12 12 C 1.50706 * 109.47182 * 179.97438 * 11 10 2 13 13 H 1.08000 * 119.99302 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72677 * 12 11 10 15 15 N 1.31514 * 120.00481 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99745 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47209 * 90.00365 * 16 14 12 18 18 H 1.48506 * 109.47294 * 210.00213 * 16 14 12 19 19 H 1.48501 * 109.47275 * 330.00116 * 16 14 12 20 20 H 1.09000 * 109.47208 * 300.00289 * 1 2 3 21 21 H 1.09003 * 109.47118 * 59.99580 * 1 2 3 22 22 H 1.08998 * 109.47489 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47102 * 304.99504 * 4 2 1 24 24 H 1.09001 * 109.47432 * 64.99605 * 4 2 1 25 25 H 1.07994 * 126.12976 * 0.02562 * 6 5 4 26 26 H 1.08002 * 126.03320 * 180.02562 * 7 6 5 27 27 H 1.08002 * 125.89667 * 180.02562 * 8 7 6 28 28 H 1.00902 * 110.99849 * 208.95476 * 10 2 1 29 29 H 1.09001 * 109.47613 * 60.00104 * 11 10 2 30 30 H 1.08998 * 109.47678 * 300.00000 * 11 10 2 31 31 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.6180 1.3109 6 6 4.2185 -0.1323 2.3448 7 6 5.5273 -0.2094 2.0097 8 6 5.6114 -0.7605 0.7270 9 7 4.3971 -1.0107 0.3093 10 7 2.0196 -0.6925 -1.1995 11 6 2.0824 0.2226 -2.3468 12 6 2.5884 -0.5215 -3.5558 13 1 2.8379 -1.5695 -3.4793 14 6 2.7269 0.1340 -4.7607 15 7 3.1680 -0.5155 -5.8158 16 14 2.2867 1.9444 -4.8950 17 1 3.4841 2.7688 -4.5922 18 1 1.8185 2.2391 -6.2732 19 1 1.2074 2.2646 -3.9266 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6054 -0.2617 2.1370 24 1 1.7515 -1.7716 1.2056 25 1 3.8205 0.2489 3.2736 26 1 6.3598 0.1000 2.6243 27 1 6.5218 -0.9514 0.1782 28 1 2.9172 -1.1206 -1.0288 29 1 2.7588 1.0462 -2.1183 30 1 1.0870 0.6164 -2.5525 31 1 3.2650 -0.0544 -6.6636 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042540305.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:48 Heat of formation + Delta-G solvation = 82.913117 kcal Electronic energy + Delta-G solvation = -13687.945216 eV Core-core repulsion = 11392.424719 eV Total energy + Delta-G solvation = -2295.520497 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.97450 -36.74791 -33.22265 -31.97894 -30.13706 -29.81981 -26.55569 -25.95463 -21.75166 -20.91875 -20.55565 -20.04491 -17.12709 -16.71270 -15.49329 -14.94794 -14.31629 -14.06523 -13.82772 -13.40194 -12.77783 -12.64613 -12.42266 -12.09569 -11.96868 -11.73358 -11.41593 -10.97501 -10.59764 -10.45761 -10.09240 -9.70956 -9.21894 -9.15363 -8.52472 -8.43566 -7.36990 -5.97899 -3.94177 2.08324 2.69151 3.04414 3.32652 3.39145 3.42359 4.48273 4.55029 4.84710 4.92080 5.24845 5.29507 5.34599 5.42747 5.62800 5.76487 5.84544 5.89744 6.10048 6.14681 6.29993 6.54896 6.78951 6.90558 7.14770 7.17472 7.72134 7.90019 7.99941 8.65890 8.76539 9.11977 9.64713 11.15760 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031972 B = 0.009151 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.562678 B = 3059.157956 C = 3523.437803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.067 3.933 3 H 0.037 0.963 4 C 0.128 3.872 5 N -0.371 5.371 6 C 0.046 3.954 7 C -0.279 4.279 8 C 0.043 3.957 9 N -0.278 5.278 10 N -0.681 5.681 11 C 0.169 3.831 12 C -0.507 4.507 13 H 0.079 0.921 14 C 0.067 3.933 15 N -0.902 5.902 16 Si 0.877 3.123 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.268 1.268 20 H 0.047 0.953 21 H 0.063 0.937 22 H 0.063 0.937 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.169 0.831 26 H 0.144 0.856 27 H 0.182 0.818 28 H 0.359 0.641 29 H -0.026 1.026 30 H 0.022 0.978 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 2.485 17.558 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.044 4.044 3 H 0.054 0.946 4 C 0.007 3.993 5 N -0.153 5.153 6 C -0.101 4.101 7 C -0.309 4.309 8 C -0.143 4.143 9 N -0.099 5.099 10 N -0.319 5.319 11 C 0.041 3.959 12 C -0.546 4.546 13 H 0.097 0.903 14 C -0.134 4.134 15 N -0.542 5.542 16 Si 0.704 3.296 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.193 1.193 20 H 0.066 0.934 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.114 0.886 24 H 0.111 0.889 25 H 0.186 0.814 26 H 0.161 0.839 27 H 0.199 0.801 28 H 0.185 0.815 29 H -0.008 1.008 30 H 0.040 0.960 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.652 1.775 16.238 16.418 hybrid contribution 1.103 1.956 0.710 2.355 sum -0.549 3.731 16.949 17.363 Atomic orbital electron populations 1.21741 0.94118 1.02430 1.01171 1.21778 0.96125 0.95983 0.90559 0.94551 1.22129 0.73815 1.03334 1.00043 1.48931 1.06757 1.47526 1.12117 1.22522 0.92582 1.00749 0.94217 1.21460 0.96154 1.14308 0.98969 1.23934 0.96099 0.99013 0.95243 1.77178 0.99462 1.21885 1.11408 1.60791 1.35956 1.32825 1.02328 1.19961 0.95181 0.91097 0.89677 1.21055 1.42673 0.98748 0.92087 0.90319 1.24891 0.94976 0.97816 0.95702 1.69901 1.47079 1.36412 1.00769 0.86839 0.79166 0.86247 0.77313 1.20460 1.21169 1.19318 0.93374 0.91827 0.91787 0.88618 0.88911 0.81361 0.83863 0.80091 0.81494 1.00841 0.96009 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.41 37.16 0.35 -1.66 16 2 C 0.07 1.17 2.86 -67.71 -0.19 0.97 16 3 H 0.04 0.68 7.80 -51.93 -0.40 0.28 16 4 C 0.13 1.74 6.08 -4.04 -0.02 1.72 16 5 N -0.37 -5.71 3.68 -61.36 -0.23 -5.93 16 6 C 0.05 0.57 11.45 -17.22 -0.20 0.37 16 7 C -0.28 -3.56 10.80 -40.01 -0.43 -3.99 16 8 C 0.04 0.66 12.02 -17.37 -0.21 0.45 16 9 N -0.28 -5.12 9.83 30.62 0.30 -4.82 16 10 N -0.68 -15.37 6.30 -107.99 -0.68 -16.05 16 11 C 0.17 4.43 4.31 -4.98 -0.02 4.41 16 12 C -0.51 -15.43 9.87 -34.44 -0.34 -15.77 16 13 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 14 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.90 -28.76 13.96 55.43 0.77 -27.98 16 16 Si 0.88 22.62 27.47 -169.99 -4.67 17.95 16 17 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.27 -6.68 6.53 56.52 0.37 -6.31 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.06 1.05 7.45 -51.93 -0.39 0.67 16 22 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.10 0.91 8.07 -51.93 -0.42 0.49 16 24 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 26 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.18 2.30 8.06 -52.49 -0.42 1.88 16 28 H 0.36 8.36 5.41 -39.29 -0.21 8.14 16 29 H -0.03 -0.70 7.50 -51.93 -0.39 -1.09 16 30 H 0.02 0.58 6.47 -51.93 -0.34 0.24 16 31 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 LS Contribution 261.93 15.07 3.95 3.95 Total: -1.00 -34.63 261.93 -6.00 -40.63 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.28 Total: 3.81 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -1.17 Total: -11.54 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.17 Total: -54.79 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.67 Total: 17.95 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -34.63 -6.00 -40.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042540305.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.538 kcal (2) G-P(sol) polarization free energy of solvation -34.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds