Wall clock time and date at job start Sun Mar 29 2020 21:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47066 * 2 1 4 4 C 1.53001 * 109.46848 * 120.00158 * 2 1 3 5 5 N 1.46504 * 109.46785 * 184.99775 * 4 2 1 6 6 C 1.34949 * 126.03473 * 124.99630 * 5 4 2 7 7 C 1.35318 * 107.74185 * 179.97438 * 6 5 4 8 8 C 1.39864 * 107.92114 * 0.02562 * 7 6 5 9 9 N 1.30829 * 108.20288 * 359.73649 * 8 7 6 10 10 N 1.46901 * 109.46830 * 239.99963 * 2 1 3 11 11 C 1.46895 * 110.99816 * 85.00098 * 10 2 1 12 12 C 1.50706 * 109.47182 * 179.97438 * 11 10 2 13 13 H 1.08000 * 119.99302 * 0.02562 * 12 11 10 14 14 C 1.37871 * 120.00436 * 179.72677 * 12 11 10 15 15 N 1.31514 * 120.00481 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99745 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47209 * 90.00365 * 16 14 12 18 18 H 1.48506 * 109.47294 * 210.00213 * 16 14 12 19 19 H 1.48501 * 109.47275 * 330.00116 * 16 14 12 20 20 H 1.09000 * 109.47208 * 300.00289 * 1 2 3 21 21 H 1.09003 * 109.47118 * 59.99580 * 1 2 3 22 22 H 1.08998 * 109.47489 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47102 * 304.99504 * 4 2 1 24 24 H 1.09001 * 109.47432 * 64.99605 * 4 2 1 25 25 H 1.07994 * 126.12976 * 0.02562 * 6 5 4 26 26 H 1.08002 * 126.03320 * 180.02562 * 7 6 5 27 27 H 1.08002 * 125.89667 * 180.02562 * 8 7 6 28 28 H 1.00902 * 110.99849 * 208.95476 * 10 2 1 29 29 H 1.09001 * 109.47613 * 60.00104 * 11 10 2 30 30 H 1.08998 * 109.47678 * 300.00000 * 11 10 2 31 31 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.6180 1.3109 6 6 4.2185 -0.1323 2.3448 7 6 5.5273 -0.2094 2.0097 8 6 5.6114 -0.7605 0.7270 9 7 4.3971 -1.0107 0.3093 10 7 2.0196 -0.6925 -1.1995 11 6 2.0824 0.2226 -2.3468 12 6 2.5884 -0.5215 -3.5558 13 1 2.8379 -1.5695 -3.4793 14 6 2.7269 0.1340 -4.7607 15 7 3.1680 -0.5155 -5.8158 16 14 2.2867 1.9444 -4.8950 17 1 3.4841 2.7688 -4.5922 18 1 1.8185 2.2391 -6.2732 19 1 1.2074 2.2646 -3.9266 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.6054 -0.2617 2.1370 24 1 1.7515 -1.7716 1.2056 25 1 3.8205 0.2489 3.2736 26 1 6.3598 0.1000 2.6243 27 1 6.5218 -0.9514 0.1782 28 1 2.9172 -1.1206 -1.0288 29 1 2.7588 1.0462 -2.1183 30 1 1.0870 0.6164 -2.5525 31 1 3.2650 -0.0544 -6.6636 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042540305.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:47 Heat of formation + Delta-G solvation = 56.838438 kcal Electronic energy + Delta-G solvation = -13689.075899 eV Core-core repulsion = 11392.424719 eV Total energy + Delta-G solvation = -2296.651180 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.03770 -38.22521 -35.17116 -33.66158 -31.68710 -30.87562 -28.44958 -27.16304 -23.61550 -22.09839 -21.86307 -21.31678 -19.00569 -18.09195 -16.95612 -16.69868 -15.77436 -15.56250 -15.23216 -14.71689 -14.43562 -14.14922 -13.88934 -13.62101 -13.25901 -12.99041 -12.93433 -12.62672 -12.27573 -11.98860 -11.81751 -11.53138 -11.29398 -10.86073 -10.35729 -9.47250 -9.14234 -8.33855 -6.37849 1.05731 1.27484 1.30077 1.41720 1.69557 1.99949 2.29340 2.98940 3.40319 3.61589 4.01498 4.11684 4.17639 4.31597 4.43889 4.64482 4.72290 4.75798 4.90668 4.94537 5.02062 5.09312 5.18306 5.35354 5.51987 5.75915 5.95411 6.24038 6.58257 6.64862 6.78113 6.96744 7.26795 8.83498 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031972 B = 0.009151 C = 0.007945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.562678 B = 3059.157956 C = 3523.437803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.062 3.938 3 H 0.024 0.976 4 C 0.131 3.869 5 N -0.383 5.383 6 C 0.058 3.942 7 C -0.285 4.285 8 C 0.028 3.972 9 N -0.348 5.348 10 N -0.695 5.695 11 C 0.186 3.814 12 C -0.526 4.526 13 H 0.031 0.969 14 C 0.008 3.992 15 N -0.946 5.946 16 Si 0.953 3.047 17 H -0.270 1.270 18 H -0.273 1.273 19 H -0.252 1.252 20 H 0.093 0.907 21 H 0.039 0.961 22 H 0.065 0.935 23 H 0.151 0.849 24 H 0.090 0.910 25 H 0.218 0.782 26 H 0.173 0.827 27 H 0.190 0.810 28 H 0.354 0.646 29 H -0.035 1.035 30 H 0.024 0.976 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.175 4.563 20.225 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.049 4.049 3 H 0.042 0.958 4 C 0.010 3.990 5 N -0.166 5.166 6 C -0.088 4.088 7 C -0.314 4.314 8 C -0.157 4.157 9 N -0.171 5.171 10 N -0.333 5.333 11 C 0.057 3.943 12 C -0.564 4.564 13 H 0.049 0.951 14 C -0.190 4.190 15 N -0.587 5.587 16 Si 0.776 3.224 17 H -0.195 1.195 18 H -0.198 1.198 19 H -0.176 1.176 20 H 0.112 0.888 21 H 0.058 0.942 22 H 0.084 0.916 23 H 0.168 0.832 24 H 0.108 0.892 25 H 0.235 0.765 26 H 0.190 0.810 27 H 0.207 0.793 28 H 0.179 0.821 29 H -0.018 1.018 30 H 0.042 0.958 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.611 3.840 18.928 19.489 hybrid contribution 1.454 1.210 -0.062 1.893 sum -1.157 5.050 18.866 19.564 Atomic orbital electron populations 1.21721 0.92018 1.02909 1.02228 1.21977 0.97695 0.95226 0.90046 0.95753 1.22257 0.73371 1.03271 1.00096 1.49080 1.07116 1.48005 1.12380 1.23337 0.92215 0.98581 0.94691 1.21858 0.97628 1.13886 0.98047 1.24348 0.95801 0.98853 0.96745 1.77070 1.01107 1.24756 1.14135 1.60739 1.35846 1.32901 1.03839 1.19625 0.94341 0.90746 0.89619 1.21299 1.43425 0.97130 0.94519 0.95105 1.25895 0.94507 1.03606 0.94976 1.70054 1.48067 1.38938 1.01601 0.85637 0.79548 0.79029 0.78199 1.19495 1.19794 1.17596 0.88847 0.94201 0.91611 0.83179 0.89164 0.76510 0.81004 0.79282 0.82109 1.01756 0.95798 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 9.41 71.98 0.68 -2.84 16 2 C 0.06 2.03 2.86 44.92 0.13 2.16 16 3 H 0.02 0.87 7.80 -2.39 -0.02 0.85 16 4 C 0.13 3.19 6.08 86.38 0.53 3.72 16 5 N -0.38 -11.07 3.68 -348.05 -1.28 -12.35 16 6 C 0.06 1.22 11.45 83.54 0.96 2.18 16 7 C -0.29 -6.61 10.80 21.99 0.24 -6.37 16 8 C 0.03 0.85 12.02 85.24 1.02 1.87 16 9 N -0.35 -13.03 9.83 -57.03 -0.56 -13.59 16 10 N -0.70 -31.95 6.30 -495.58 -3.12 -35.07 16 11 C 0.19 9.89 4.31 85.56 0.37 10.26 16 12 C -0.53 -33.29 9.87 25.60 0.25 -33.04 16 13 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 14 C 0.01 0.47 5.47 84.65 0.46 0.93 16 15 N -0.95 -62.07 13.96 21.45 0.30 -61.77 16 16 Si 0.95 46.92 27.47 68.60 1.88 48.80 16 17 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.25 -11.67 6.53 99.48 0.65 -11.02 16 20 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.04 1.25 7.45 -2.39 -0.02 1.23 16 22 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.15 2.01 8.07 -2.39 -0.02 1.99 16 24 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.22 2.24 8.06 -2.91 -0.02 2.22 16 26 H 0.17 2.83 8.06 -2.91 -0.02 2.80 16 27 H 0.19 5.01 8.06 -2.91 -0.02 4.98 16 28 H 0.35 17.08 5.41 -89.69 -0.48 16.60 16 29 H -0.04 -1.91 7.50 -2.39 -0.02 -1.92 16 30 H 0.02 1.26 6.47 -2.39 -0.02 1.24 16 31 H 0.27 16.25 8.31 -92.71 -0.77 15.48 16 Total: -1.00 -79.53 261.93 2.42 -77.11 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.57 Total: 18.00 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: 4.63 Total: -21.13 kcal Atomic # 7 Polarization: -118.12 SS G_CDS: -4.66 Total: -122.78 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.88 Total: 48.80 kcal Total: -79.53 2.42 -77.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042540305.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.945 kcal (2) G-P(sol) polarization free energy of solvation -79.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds