Wall clock time and date at job start Sun Mar 29 2020 21:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 5 5 H 1.08005 * 119.99735 * 240.00290 * 4 2 1 6 6 C 1.37879 * 120.00295 * 60.00270 * 4 2 1 7 7 N 1.31514 * 119.99693 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00152 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47124 * 119.99693 * 8 6 4 11 11 H 1.48501 * 109.46777 * 239.99619 * 8 6 4 12 12 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 13 13 C 1.46901 * 110.99870 * 274.99984 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 N 1.46502 * 109.46871 * 179.97438 * 14 13 12 16 16 C 1.34940 * 126.03570 * 124.99737 * 15 14 13 17 17 C 1.35322 * 107.74961 * 179.97438 * 16 15 14 18 18 C 1.39871 * 107.91225 * 0.02562 * 17 16 15 19 19 N 1.30835 * 108.20589 * 359.74163 * 18 17 16 20 20 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 21 21 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 22 22 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 23 23 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 24 24 H 1.00901 * 110.99869 * 151.04696 * 12 2 1 25 25 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 26 26 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 27 27 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 28 28 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 29 29 H 1.08000 * 126.13265 * 0.02562 * 16 15 14 30 30 H 1.07991 * 126.04277 * 179.97438 * 17 16 15 31 31 H 1.08008 * 125.89421 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6037 10 1 1.1661 -1.5869 -4.8159 11 1 3.1466 -0.1875 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5962 -0.5328 3.5742 15 7 2.6594 0.3800 4.7184 16 6 2.0676 0.1932 5.9166 17 6 2.3671 1.2587 6.6952 18 6 3.1690 2.1265 5.9468 19 7 3.3492 1.5984 4.7635 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.7090 1.1613 -3.4844 24 1 2.9173 -1.1205 1.0288 25 1 2.7589 1.0462 2.1182 26 1 1.0871 0.6164 2.5525 27 1 1.9201 -1.3565 3.8030 28 1 3.5917 -0.9261 3.3683 29 1 1.4637 -0.6551 6.2032 30 1 2.0434 1.4121 7.7140 31 1 3.5731 3.0682 6.2883 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042540845.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:43 Heat of formation + Delta-G solvation = 75.425584 kcal Electronic energy + Delta-G solvation = -13240.862464 eV Core-core repulsion = 10945.017283 eV Total energy + Delta-G solvation = -2295.845181 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.97830 -36.34986 -33.76007 -32.04327 -30.08571 -29.08340 -26.49321 -25.18250 -22.57852 -20.98338 -20.33905 -19.82915 -17.08413 -16.48868 -15.36311 -14.90826 -14.53072 -14.12929 -13.71410 -13.27269 -12.92490 -12.73430 -12.44223 -11.96966 -11.36937 -11.12348 -10.89056 -10.75752 -10.53557 -10.25695 -10.16475 -10.04549 -9.30876 -8.86869 -8.51856 -8.48922 -7.41572 -6.05877 -4.12906 2.02750 2.65752 2.93825 3.27140 3.34902 3.38822 4.37121 4.63379 4.90359 5.18575 5.24425 5.25957 5.44973 5.54701 5.69944 5.83086 6.05117 6.20610 6.36127 6.74747 6.82930 7.09010 7.10976 7.19422 7.42613 7.73591 7.82937 7.83770 8.20772 8.28165 8.57436 8.96425 9.53231 11.00674 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.070775 B = 0.005567 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.526915 B = 5028.289467 C = 5065.307163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.687 5.687 13 C 0.051 3.949 14 C 0.133 3.867 15 N -0.362 5.362 16 C 0.053 3.947 17 C -0.284 4.284 18 C 0.035 3.965 19 N -0.292 5.292 20 H 0.003 0.997 21 H 0.082 0.918 22 H 0.032 0.968 23 H 0.261 0.739 24 H 0.332 0.668 25 H 0.036 0.964 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.172 0.828 30 H 0.143 0.857 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 -1.216 14.325 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.319 5.319 13 C -0.079 4.079 14 C 0.012 3.988 15 N -0.145 5.145 16 C -0.094 4.094 17 C -0.313 4.313 18 C -0.150 4.150 19 N -0.114 5.114 20 H 0.022 0.978 21 H 0.100 0.900 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.149 0.851 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.189 0.811 30 H 0.161 0.839 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 1.745 -1.313 13.061 13.242 hybrid contribution 0.568 0.046 -0.227 0.614 sum 2.313 -1.267 12.833 13.102 Atomic orbital electron populations 1.21720 0.97775 0.99364 0.99428 1.19121 0.92670 0.92467 0.85226 0.97955 1.21274 1.31602 1.12583 0.90355 0.92067 1.24933 0.95002 0.94979 0.99128 1.69908 1.36575 1.22849 1.23463 0.86437 0.78606 0.79583 0.82749 1.19722 1.20932 1.21057 1.60747 1.32061 1.32971 1.06111 1.22083 1.00555 0.94809 0.90480 1.21843 1.02940 0.90163 0.83893 1.48853 1.37980 1.16587 1.11062 1.22592 0.99438 1.00882 0.86480 1.21459 1.10273 0.97262 1.02355 1.23861 0.99229 1.00378 0.91579 1.77403 1.17822 0.95252 1.20947 0.97795 0.89989 0.94875 0.92901 0.85129 0.94621 0.91418 0.87985 0.90050 0.81110 0.83874 0.80374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.19 37.16 0.34 -2.79 16 2 C 0.21 5.44 2.60 -68.86 -0.18 5.26 16 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.33 16 4 C -0.52 -14.25 8.59 -34.44 -0.30 -14.54 16 5 H 0.06 1.64 7.62 -52.48 -0.40 1.24 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.69 -14.43 6.30 -107.95 -0.68 -15.11 16 13 C 0.05 0.95 5.67 -3.82 -0.02 0.93 16 14 C 0.13 1.92 6.77 -4.04 -0.03 1.89 16 15 N -0.36 -5.38 3.68 -61.37 -0.23 -5.60 16 16 C 0.05 0.64 11.45 -17.22 -0.20 0.45 16 17 C -0.28 -3.31 10.80 -40.01 -0.43 -3.75 16 18 C 0.04 0.46 12.02 -17.37 -0.21 0.26 16 19 N -0.29 -4.78 12.42 30.63 0.38 -4.40 16 20 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 21 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.33 6.67 8.22 -39.29 -0.32 6.35 16 25 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 26 H 0.07 1.32 7.44 -51.93 -0.39 0.94 16 27 H 0.10 1.26 8.07 -51.93 -0.42 0.84 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.18 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 266.48 15.07 4.02 4.02 Total: -1.00 -30.67 266.48 -6.32 -37.00 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.30 Total: 3.56 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -1.12 Total: -10.69 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.10 Total: -50.09 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -30.67 -6.32 -37.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042540845.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.422 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds