Wall clock time and date at job start Sun Mar 29 2020 21:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 5 5 H 1.08005 * 119.99735 * 240.00290 * 4 2 1 6 6 C 1.37879 * 120.00295 * 60.00270 * 4 2 1 7 7 N 1.31514 * 119.99693 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00152 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47060 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47124 * 119.99693 * 8 6 4 11 11 H 1.48501 * 109.46777 * 239.99619 * 8 6 4 12 12 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 13 13 C 1.46901 * 110.99870 * 274.99984 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 N 1.46502 * 109.46871 * 179.97438 * 14 13 12 16 16 C 1.34940 * 126.03570 * 124.99737 * 15 14 13 17 17 C 1.35322 * 107.74961 * 179.97438 * 16 15 14 18 18 C 1.39871 * 107.91225 * 0.02562 * 17 16 15 19 19 N 1.30835 * 108.20589 * 359.74163 * 18 17 16 20 20 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 21 21 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 22 22 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 23 23 H 0.96996 * 119.99950 * 180.02562 * 7 6 4 24 24 H 1.00901 * 110.99869 * 151.04696 * 12 2 1 25 25 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 26 26 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 27 27 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 28 28 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 29 29 H 1.08000 * 126.13265 * 0.02562 * 16 15 14 30 30 H 1.07991 * 126.04277 * 179.97438 * 17 16 15 31 31 H 1.08008 * 125.89421 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3213 -1.1205 -4.0079 9 1 3.1463 -2.2872 -3.6037 10 1 1.1661 -1.5869 -4.8159 11 1 3.1466 -0.1875 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5962 -0.5328 3.5742 15 7 2.6594 0.3800 4.7184 16 6 2.0676 0.1932 5.9166 17 6 2.3671 1.2587 6.6952 18 6 3.1690 2.1265 5.9468 19 7 3.3492 1.5984 4.7635 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 0.7090 1.1613 -3.4844 24 1 2.9173 -1.1205 1.0288 25 1 2.7589 1.0462 2.1182 26 1 1.0871 0.6164 2.5525 27 1 1.9201 -1.3565 3.8030 28 1 3.5917 -0.9261 3.3683 29 1 1.4637 -0.6551 6.2032 30 1 2.0434 1.4121 7.7140 31 1 3.5731 3.0682 6.2883 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042540845.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:43 Heat of formation + Delta-G solvation = 54.157334 kcal Electronic energy + Delta-G solvation = -13241.784724 eV Core-core repulsion = 10945.017283 eV Total energy + Delta-G solvation = -2296.767441 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.97241 -38.09106 -35.37809 -33.71681 -31.28078 -30.58485 -28.02635 -27.22093 -24.00402 -22.03020 -21.70436 -21.44674 -18.61611 -18.02762 -16.96273 -16.47627 -16.09422 -15.39713 -15.15235 -14.84604 -14.18171 -14.16510 -13.73401 -13.55127 -13.02891 -12.89563 -12.69257 -12.51818 -12.25989 -12.12901 -11.94731 -11.50511 -10.94158 -10.61749 -10.38042 -9.47922 -9.24106 -8.16529 -6.31744 1.04724 1.41636 1.42844 1.55082 1.63862 2.01083 2.40161 3.12555 3.40656 3.88622 3.95647 4.10850 4.21898 4.34554 4.61654 4.72966 4.82778 4.90595 4.95478 5.01142 5.14744 5.19684 5.39294 5.62112 5.77221 5.81946 6.16034 6.19470 6.33166 6.66346 6.83704 6.92367 7.39113 8.89923 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.070775 B = 0.005567 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.526915 B = 5028.289467 C = 5065.307163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 H -0.037 1.037 4 C -0.538 4.538 5 H 0.065 0.935 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.279 1.279 11 H -0.282 1.282 12 N -0.676 5.676 13 C 0.062 3.938 14 C 0.145 3.855 15 N -0.380 5.380 16 C 0.053 3.947 17 C -0.286 4.286 18 C 0.032 3.968 19 N -0.351 5.351 20 H 0.017 0.983 21 H 0.057 0.943 22 H 0.035 0.965 23 H 0.263 0.737 24 H 0.338 0.662 25 H 0.008 0.992 26 H 0.054 0.946 27 H 0.130 0.870 28 H 0.087 0.913 29 H 0.208 0.792 30 H 0.173 0.827 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -2.548 15.520 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H -0.020 1.020 4 C -0.576 4.576 5 H 0.083 0.917 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.793 3.207 9 H -0.187 1.187 10 H -0.205 1.205 11 H -0.208 1.208 12 N -0.307 5.307 13 C -0.069 4.069 14 C 0.024 3.976 15 N -0.163 5.163 16 C -0.093 4.093 17 C -0.315 4.315 18 C -0.153 4.153 19 N -0.173 5.173 20 H 0.036 0.964 21 H 0.075 0.925 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.156 0.844 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.105 0.895 29 H 0.225 0.775 30 H 0.191 0.809 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.827 -2.650 14.288 14.646 hybrid contribution 0.532 0.526 -0.493 0.896 sum 2.359 -2.124 13.795 14.155 Atomic orbital electron populations 1.21537 0.97476 0.99218 0.98886 1.18935 0.92948 0.90591 0.86900 1.01969 1.21608 1.31846 1.12849 0.91316 0.91653 1.25803 0.95088 0.95647 1.02316 1.70045 1.37525 1.24165 1.24249 0.85357 0.78119 0.78559 0.78682 1.18690 1.20453 1.20827 1.60628 1.32386 1.32617 1.05117 1.21966 0.99348 0.94181 0.91403 1.21671 1.03692 0.89980 0.82304 1.48865 1.39011 1.16564 1.11886 1.23309 0.98666 1.02000 0.85290 1.21891 1.09485 0.96563 1.03550 1.24451 0.98682 1.01245 0.90912 1.77356 1.20124 0.96804 1.23027 0.96384 0.92469 0.94590 0.92780 0.84444 0.97371 0.92706 0.85204 0.89459 0.77482 0.80916 0.77959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.74 9.19 71.98 0.66 -5.07 16 2 C 0.21 11.20 2.60 44.17 0.11 11.32 16 3 H -0.04 -2.21 7.80 -2.38 -0.02 -2.22 16 4 C -0.54 -29.63 8.59 25.60 0.22 -29.41 16 5 H 0.07 3.47 7.62 -2.91 -0.02 3.44 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -53.83 11.32 21.45 0.24 -53.59 16 8 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 N -0.68 -28.32 6.30 -495.43 -3.12 -31.44 16 13 C 0.06 2.29 5.67 86.30 0.49 2.78 16 14 C 0.14 3.98 6.77 86.38 0.58 4.57 16 15 N -0.38 -10.77 3.68 -348.06 -1.28 -12.05 16 16 C 0.05 1.14 11.45 83.54 0.96 2.10 16 17 C -0.29 -5.89 10.80 21.99 0.24 -5.65 16 18 C 0.03 0.81 12.02 85.24 1.02 1.83 16 19 N -0.35 -11.37 12.42 -57.02 -0.71 -12.08 16 20 H 0.02 0.81 7.45 -2.38 -0.02 0.79 16 21 H 0.06 3.19 6.07 -2.39 -0.01 3.18 16 22 H 0.03 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 24 H 0.34 13.47 8.22 -89.69 -0.74 12.73 16 25 H 0.01 0.34 8.06 -2.39 -0.02 0.32 16 26 H 0.05 2.16 7.44 -2.39 -0.02 2.14 16 27 H 0.13 2.83 8.07 -2.39 -0.02 2.81 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.21 2.66 8.06 -2.91 -0.02 2.63 16 30 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 31 H 0.20 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -66.83 266.48 2.27 -64.56 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.37 Total: 15.69 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: 4.74 Total: -16.51 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -4.87 Total: -109.17 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -66.83 2.27 -64.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042540845.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.718 kcal (2) G-P(sol) polarization free energy of solvation -66.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds