Wall clock time and date at job start Sun Mar 29 2020 21:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3 13 13 C 1.46894 * 111.00006 * 274.99752 * 12 2 1 14 14 C 1.53005 * 109.47093 * 179.97438 * 13 12 2 15 15 N 1.46503 * 109.46883 * 180.02562 * 14 13 12 16 16 C 1.36876 * 126.39816 * 90.00413 * 15 14 13 17 17 C 1.34668 * 106.81869 * 179.97438 * 16 15 14 18 18 N 1.34131 * 108.02016 * 0.02562 * 17 16 15 19 19 C 1.30504 * 109.25300 * 359.72449 * 18 17 16 20 20 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 21 21 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 23 23 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 24 24 H 1.00895 * 110.99990 * 38.95438 * 12 2 1 25 25 H 1.08997 * 109.47383 * 300.00362 * 13 12 2 26 26 H 1.09003 * 109.46973 * 60.00294 * 13 12 2 27 27 H 1.08994 * 109.47064 * 300.00040 * 14 13 12 28 28 H 1.08995 * 109.46676 * 60.00580 * 14 13 12 29 29 H 1.08001 * 126.59388 * 359.96290 * 16 15 14 30 30 H 1.07999 * 125.99068 * 179.97438 * 17 16 15 31 31 H 1.07995 * 125.64528 * 180.29164 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2227 2.3469 14 6 2.5949 -0.5330 3.5746 15 7 2.6569 0.3796 4.7190 16 6 1.6564 0.6195 5.6217 17 6 2.1342 1.5184 6.5033 18 7 3.3921 1.8196 6.1481 19 6 3.7138 1.1371 5.0834 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.7173 1.1669 -3.4844 24 1 1.4495 -1.4978 1.4102 25 1 2.7588 1.0463 2.1182 26 1 1.0870 0.6165 2.5524 27 1 1.9181 -1.3563 3.8031 28 1 3.5902 -0.9270 3.3693 29 1 0.6727 0.1737 5.6261 30 1 1.5983 1.9260 7.3477 31 1 4.6667 1.1737 4.5764 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042541388.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:46 Heat of formation + Delta-G solvation = 59.541380 kcal Electronic energy + Delta-G solvation = -13271.229788 eV Core-core repulsion = 10974.695816 eV Total energy + Delta-G solvation = -2296.533972 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.89811 -36.61767 -34.21408 -32.32336 -29.68990 -29.18328 -26.50771 -25.20963 -22.57980 -21.22488 -20.73018 -20.32411 -17.25185 -16.44279 -15.23973 -14.94193 -14.76527 -14.21031 -13.80227 -13.53598 -13.39165 -12.92768 -12.38109 -12.01193 -11.73568 -11.31007 -10.97511 -10.83536 -10.57339 -10.24332 -10.06223 -9.89559 -9.49776 -9.10354 -8.44072 -8.43631 -7.47642 -6.05874 -4.10291 2.16356 2.89744 3.26465 3.29968 3.34468 3.37262 4.37621 4.77727 4.81147 4.87808 5.10099 5.25842 5.38784 5.48652 5.49563 5.72144 5.93492 6.14650 6.40627 6.57384 6.71678 6.81436 6.96137 7.18099 7.29422 7.62244 7.76488 8.14019 8.15748 8.34227 8.46244 8.95997 9.55449 11.01240 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.069665 B = 0.005617 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.826031 B = 4983.476354 C = 5099.251355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.213 3.787 3 H 0.034 0.966 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.680 5.680 13 C 0.047 3.953 14 C 0.104 3.896 15 N -0.451 5.451 16 C -0.057 4.057 17 C -0.038 4.038 18 N -0.503 5.503 19 C 0.183 3.817 20 H 0.090 0.910 21 H 0.029 0.971 22 H 0.004 0.996 23 H 0.261 0.739 24 H 0.326 0.674 25 H 0.072 0.928 26 H 0.026 0.974 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.170 0.830 30 H 0.166 0.834 31 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.701 -2.301 11.598 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.106 3.894 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.311 5.311 13 C -0.083 4.083 14 C -0.019 4.019 15 N -0.133 5.133 16 C -0.191 4.191 17 C -0.186 4.186 18 N -0.221 5.221 19 C -0.100 4.100 20 H 0.109 0.891 21 H 0.048 0.952 22 H 0.023 0.977 23 H 0.071 0.929 24 H 0.143 0.857 25 H 0.090 0.910 26 H 0.044 0.956 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.187 0.813 30 H 0.183 0.817 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.799 -1.640 11.554 11.807 hybrid contribution -1.348 -0.850 -1.142 1.961 sum 0.451 -2.490 10.412 10.715 Atomic orbital electron populations 1.22436 1.00527 0.99290 1.00610 1.19188 0.89732 0.94452 0.86065 0.94795 1.21077 1.30697 1.12549 0.89484 0.91888 1.24958 0.95237 0.95158 0.99131 1.69868 1.37097 1.23038 1.23640 0.86530 0.79223 0.79544 0.81897 1.20321 1.21400 1.20225 1.60815 1.58285 1.08935 1.03043 1.22196 0.99337 0.96481 0.90331 1.22011 1.04710 0.91314 0.83821 1.45646 1.12132 1.33483 1.22089 1.22741 0.95773 1.05832 0.94710 1.22248 0.93013 1.01150 1.02155 1.70273 1.14568 1.24351 1.12934 1.25012 0.94517 0.94184 0.96283 0.89110 0.95197 0.97684 0.92879 0.85734 0.90960 0.95621 0.89468 0.87980 0.81252 0.81686 0.77998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.94 8.94 37.16 0.33 -3.61 16 2 C 0.21 5.15 2.57 -68.86 -0.18 4.98 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.51 16 4 C -0.50 -13.40 8.84 -34.44 -0.30 -13.70 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.52 5.31 -17.82 -0.09 1.43 16 7 N -0.90 -25.26 11.33 55.43 0.63 -24.63 16 8 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.68 -13.22 6.23 -107.95 -0.67 -13.89 16 13 C 0.05 0.77 5.81 -3.82 -0.02 0.75 16 14 C 0.10 1.29 6.41 -4.04 -0.03 1.27 16 15 N -0.45 -5.90 2.75 -118.58 -0.33 -6.22 16 16 C -0.06 -0.71 11.58 -16.56 -0.19 -0.90 16 17 C -0.04 -0.50 11.87 -17.81 -0.21 -0.71 16 18 N -0.50 -7.70 11.25 -14.67 -0.17 -7.87 16 19 C 0.18 2.48 12.56 -90.37 -1.14 1.34 16 20 H 0.09 2.37 6.08 -51.93 -0.32 2.05 16 21 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 22 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.33 5.85 8.47 -39.29 -0.33 5.52 16 25 H 0.07 1.27 8.05 -51.93 -0.42 0.85 16 26 H 0.03 0.44 7.44 -51.93 -0.39 0.05 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.17 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.20 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 266.31 15.07 4.01 4.01 Total: -1.00 -29.83 266.31 -7.70 -37.53 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -4.33 Total: 4.22 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.83 Total: -9.16 kcal Atomic # 7 Polarization: -52.07 SS G_CDS: -0.54 Total: -52.61 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -29.83 -7.70 -37.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042541388.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.074 kcal (2) G-P(sol) polarization free energy of solvation -29.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds