Wall clock time and date at job start Sun Mar 29 2020 21:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 120.00321 * 2 1 4 4 H 1.07989 * 120.00446 * 200.53184 * 3 2 1 5 5 C 1.38823 * 119.99570 * 20.52974 * 3 2 1 6 6 N 1.31617 * 119.99543 * 14.86380 * 5 3 2 7 7 Si 1.86793 * 119.99965 * 194.86208 * 5 3 2 8 8 H 1.48504 * 109.47083 * 84.99830 * 7 5 3 9 9 H 1.48498 * 109.47272 * 204.99835 * 7 5 3 10 10 H 1.48505 * 109.47197 * 325.00362 * 7 5 3 11 11 C 1.46496 * 120.00384 * 180.02562 * 2 1 3 12 12 C 1.50703 * 109.47115 * 269.99972 * 11 2 1 13 13 C 1.38224 * 120.01152 * 104.99427 * 12 11 2 14 14 C 1.38217 * 120.02206 * 179.71945 * 13 12 11 15 15 C 1.38274 * 120.05632 * 0.30333 * 14 13 12 16 16 C 1.38178 * 120.02146 * 359.97438 * 15 14 13 17 17 C 1.38440 * 120.01471 * 285.29108 * 12 11 2 18 18 F 1.35101 * 120.01955 * 0.02562 * 17 12 11 19 19 H 1.08998 * 109.46748 * 275.11871 * 1 2 3 20 20 H 1.08999 * 109.47318 * 35.12192 * 1 2 3 21 21 H 1.08996 * 109.46692 * 155.12107 * 1 2 3 22 22 H 0.97004 * 119.99267 * 180.02562 * 6 5 3 23 23 H 1.09003 * 109.47578 * 149.99733 * 11 2 1 24 24 H 1.09002 * 109.46985 * 29.99860 * 11 2 1 25 25 H 1.07995 * 119.98935 * 0.02562 * 13 12 11 26 26 H 1.08005 * 119.97588 * 180.27568 * 14 13 12 27 27 H 1.07993 * 119.98762 * 179.97438 * 15 14 13 28 28 H 1.07993 * 120.01475 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1782 1.2156 -0.3280 5 6 1.5218 2.3500 0.4216 6 7 0.3891 2.2820 1.0885 7 14 2.2843 4.0125 0.0426 8 1 1.8695 4.4494 -1.3147 9 1 1.8254 5.0076 1.0447 10 1 3.7643 3.9021 0.0963 11 6 2.1976 -1.2686 -0.0006 12 6 2.4488 -1.7043 1.4201 13 6 1.7088 -2.7351 1.9682 14 6 1.9430 -3.1387 3.2692 15 6 2.9132 -2.5079 4.0260 16 6 3.6502 -1.4734 3.4820 17 6 3.4165 -1.0682 2.1786 18 9 4.1358 -0.0563 1.6459 19 1 -0.3633 0.0917 1.0236 20 1 -0.3634 0.8405 -0.5912 21 1 -0.3632 -0.9323 -0.4323 22 1 -0.0499 3.0955 1.3828 23 1 3.1500 -1.1381 -0.5144 24 1 1.6085 -2.0281 -0.5147 25 1 0.9508 -3.2286 1.3781 26 1 1.3674 -3.9472 3.6953 27 1 3.0950 -2.8239 5.0426 28 1 4.4076 -0.9805 4.0733 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044296901.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:36 Heat of formation + Delta-G solvation = 2.717192 kcal Electronic energy + Delta-G solvation = -13766.462996 eV Core-core repulsion = 11311.711887 eV Total energy + Delta-G solvation = -2454.751109 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.91849 -38.41630 -35.47128 -31.98287 -30.18528 -29.72381 -26.10267 -25.48685 -22.11109 -21.95125 -20.23403 -16.86532 -16.71990 -15.54402 -15.31429 -14.90256 -14.46516 -13.65148 -13.48337 -13.12312 -13.00974 -12.38990 -11.85801 -11.69005 -11.45187 -10.90993 -10.83677 -10.61825 -10.49084 -10.24855 -9.95198 -9.81678 -8.51419 -8.39691 -7.94897 -6.78832 -5.70052 -3.11522 1.79391 1.81865 3.42589 3.47997 3.50225 4.16866 4.56841 5.03690 5.27773 5.34465 5.42331 5.61150 5.69761 5.77323 5.96661 6.18793 6.40832 6.60409 6.67619 6.73247 6.79258 6.88720 7.05971 7.37716 7.55448 7.73734 7.87803 8.40142 9.25408 9.87163 10.34665 11.35119 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.038121 B = 0.011516 C = 0.010247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.325168 B = 2430.871787 C = 2731.895405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.590 5.590 3 C -0.245 4.245 4 H 0.074 0.926 5 C 0.000 4.000 6 N -0.906 5.906 7 Si 0.904 3.096 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.181 3.819 12 C -0.121 4.121 13 C -0.095 4.095 14 C -0.141 4.141 15 C -0.113 4.113 16 C -0.165 4.165 17 C 0.124 3.876 18 F -0.127 7.127 19 H 0.029 0.971 20 H 0.046 0.954 21 H -0.001 1.001 22 H 0.252 0.748 23 H 0.056 0.944 24 H 0.052 0.948 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.119 0.881 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 -9.302 2.607 10.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.310 5.310 3 C -0.374 4.374 4 H 0.091 0.909 5 C -0.198 4.198 6 N -0.551 5.551 7 Si 0.734 3.266 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.054 3.946 12 C -0.125 4.125 13 C -0.114 4.114 14 C -0.159 4.159 15 C -0.132 4.132 16 C -0.184 4.184 17 C 0.104 3.896 18 F -0.106 7.106 19 H 0.048 0.952 20 H 0.064 0.936 21 H 0.017 0.983 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.139 0.861 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.064 -9.073 2.596 9.922 hybrid contribution 0.372 1.233 0.135 1.295 sum 3.436 -7.840 2.731 8.985 Atomic orbital electron populations 1.20833 0.82174 0.95614 0.99568 1.44214 1.02047 1.00324 1.84459 1.19300 0.97271 0.84446 1.36429 0.90855 1.25002 0.97885 0.98495 0.98399 1.70096 1.18829 1.26823 1.39369 0.86259 0.78863 0.83908 0.77536 1.21430 1.21793 1.20397 1.19929 0.96812 0.88894 0.89006 1.21339 0.94386 0.94951 1.01870 1.20844 0.98830 0.96503 0.95222 1.21013 0.99156 1.01014 0.94764 1.20743 0.96672 0.96363 0.99385 1.21055 1.02880 1.00056 0.94430 1.17522 0.92766 0.87291 0.92034 1.91524 1.75683 1.57073 1.86288 0.95234 0.93553 0.98251 0.93794 0.92582 0.92928 0.86114 0.86504 0.86263 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.08 9.02 59.85 0.54 4.62 15 2 N -0.59 -15.22 2.91 -182.50 -0.53 -15.75 15 3 C -0.24 -6.90 8.29 -15.05 -0.12 -7.02 15 4 H 0.07 2.06 7.58 -52.49 -0.40 1.66 15 5 C 0.00 0.01 5.07 -17.43 -0.09 -0.08 15 6 N -0.91 -27.07 10.67 55.49 0.59 -26.47 15 7 Si 0.90 22.59 29.58 -169.99 -5.03 17.56 15 8 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 9 H -0.29 -7.33 7.11 56.52 0.40 -6.93 15 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 11 C 0.18 3.87 5.57 -5.19 -0.03 3.84 15 12 C -0.12 -2.47 5.47 -104.55 -0.57 -3.04 15 13 C -0.09 -1.64 9.67 -39.59 -0.38 -2.03 15 14 C -0.14 -2.17 10.04 -39.58 -0.40 -2.57 15 15 C -0.11 -1.75 10.04 -39.59 -0.40 -2.14 15 16 C -0.17 -2.95 10.03 -39.51 -0.40 -3.34 15 17 C 0.12 2.62 7.21 -39.42 -0.28 2.34 15 18 F -0.13 -2.97 15.11 2.25 0.03 -2.94 15 19 H 0.03 0.81 7.39 -51.93 -0.38 0.42 15 20 H 0.05 1.24 7.22 -51.93 -0.38 0.86 15 21 H 0.00 -0.02 7.83 -51.93 -0.41 -0.43 15 22 H 0.25 7.31 8.31 -40.82 -0.34 6.97 15 23 H 0.06 1.19 7.98 -51.93 -0.41 0.77 15 24 H 0.05 0.98 7.67 -51.93 -0.40 0.58 15 25 H 0.12 1.83 8.00 -52.49 -0.42 1.41 15 26 H 0.12 1.43 8.06 -52.48 -0.42 1.01 15 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 28 H 0.12 1.94 8.06 -52.49 -0.42 1.52 15 LS Contribution 246.15 15.07 3.71 3.71 Total: -1.00 -31.01 246.15 -6.55 -37.57 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -3.20 Total: -4.26 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -2.13 Total: -9.42 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.06 Total: -42.22 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.03 Total: -2.94 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.01 -6.55 -37.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044296901.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.285 kcal (2) G-P(sol) polarization free energy of solvation -31.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds