Wall clock time and date at job start Sun Mar 29 2020 21:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36941 * 120.00321 * 2 1 4 4 H 1.07989 * 120.00446 * 200.53184 * 3 2 1 5 5 C 1.38823 * 119.99570 * 20.52974 * 3 2 1 6 6 N 1.31617 * 119.99543 * 14.86380 * 5 3 2 7 7 Si 1.86793 * 119.99965 * 194.86208 * 5 3 2 8 8 H 1.48504 * 109.47083 * 84.99830 * 7 5 3 9 9 H 1.48498 * 109.47272 * 204.99835 * 7 5 3 10 10 H 1.48505 * 109.47197 * 325.00362 * 7 5 3 11 11 C 1.46496 * 120.00384 * 180.02562 * 2 1 3 12 12 C 1.50703 * 109.47115 * 269.99972 * 11 2 1 13 13 C 1.38224 * 120.01152 * 104.99427 * 12 11 2 14 14 C 1.38217 * 120.02206 * 179.71945 * 13 12 11 15 15 C 1.38274 * 120.05632 * 0.30333 * 14 13 12 16 16 C 1.38178 * 120.02146 * 359.97438 * 15 14 13 17 17 C 1.38440 * 120.01471 * 285.29108 * 12 11 2 18 18 F 1.35101 * 120.01955 * 0.02562 * 17 12 11 19 19 H 1.08998 * 109.46748 * 275.11871 * 1 2 3 20 20 H 1.08999 * 109.47318 * 35.12192 * 1 2 3 21 21 H 1.08996 * 109.46692 * 155.12107 * 1 2 3 22 22 H 0.97004 * 119.99267 * 180.02562 * 6 5 3 23 23 H 1.09003 * 109.47578 * 149.99733 * 11 2 1 24 24 H 1.09002 * 109.46985 * 29.99860 * 11 2 1 25 25 H 1.07995 * 119.98935 * 0.02562 * 13 12 11 26 26 H 1.08005 * 119.97588 * 180.27568 * 14 13 12 27 27 H 1.07993 * 119.98762 * 179.97438 * 15 14 13 28 28 H 1.07993 * 120.01475 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1782 1.2156 -0.3280 5 6 1.5218 2.3500 0.4216 6 7 0.3891 2.2820 1.0885 7 14 2.2843 4.0125 0.0426 8 1 1.8695 4.4494 -1.3147 9 1 1.8254 5.0076 1.0447 10 1 3.7643 3.9021 0.0963 11 6 2.1976 -1.2686 -0.0006 12 6 2.4488 -1.7043 1.4201 13 6 1.7088 -2.7351 1.9682 14 6 1.9430 -3.1387 3.2692 15 6 2.9132 -2.5079 4.0260 16 6 3.6502 -1.4734 3.4820 17 6 3.4165 -1.0682 2.1786 18 9 4.1358 -0.0563 1.6459 19 1 -0.3633 0.0917 1.0236 20 1 -0.3634 0.8405 -0.5912 21 1 -0.3632 -0.9323 -0.4323 22 1 -0.0499 3.0955 1.3828 23 1 3.1500 -1.1381 -0.5144 24 1 1.6085 -2.0281 -0.5147 25 1 0.9508 -3.2286 1.3781 26 1 1.3674 -3.9472 3.6953 27 1 3.0950 -2.8239 5.0426 28 1 4.4076 -0.9805 4.0733 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044296901.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:36 Heat of formation + Delta-G solvation = -15.479537 kcal Electronic energy + Delta-G solvation = -13767.252066 eV Core-core repulsion = 11311.711887 eV Total energy + Delta-G solvation = -2455.540179 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.56847 -39.81787 -37.35337 -33.82614 -31.84779 -31.17674 -28.03068 -27.33350 -23.73346 -23.49682 -21.86780 -18.78287 -18.32447 -17.11527 -16.94521 -16.55200 -16.22442 -15.45756 -15.05410 -15.00918 -14.58305 -13.96336 -13.61812 -13.23944 -13.08369 -12.77192 -12.63810 -12.39325 -12.25616 -12.00977 -11.83492 -11.74754 -10.63657 -9.76986 -9.40307 -8.83872 -7.83882 -5.28089 0.42112 0.44461 1.43012 1.44058 1.52442 2.49875 2.81906 3.30250 3.63895 3.80129 3.97024 4.07621 4.24310 4.44172 4.58551 4.71384 4.82711 4.91674 5.12479 5.29058 5.33852 5.42368 5.56071 5.63197 5.64856 5.71736 6.17244 6.31323 7.14519 7.84525 8.26141 9.19680 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.038121 B = 0.011516 C = 0.010247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.325168 B = 2430.871787 C = 2731.895405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.608 5.608 3 C -0.246 4.246 4 H 0.065 0.935 5 C -0.054 4.054 6 N -0.937 5.937 7 Si 0.961 3.039 8 H -0.281 1.281 9 H -0.294 1.294 10 H -0.275 1.275 11 C 0.180 3.820 12 C -0.146 4.146 13 C -0.097 4.097 14 C -0.132 4.132 15 C -0.101 4.101 16 C -0.174 4.174 17 C 0.079 3.921 18 F -0.153 7.153 19 H 0.001 0.999 20 H 0.018 0.982 21 H 0.038 0.962 22 H 0.246 0.754 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.144 0.856 26 H 0.160 0.840 27 H 0.161 0.839 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.119 -11.237 3.639 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.330 5.330 3 C -0.376 4.376 4 H 0.083 0.917 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.790 3.210 8 H -0.207 1.207 9 H -0.221 1.221 10 H -0.200 1.200 11 C 0.054 3.946 12 C -0.150 4.150 13 C -0.116 4.116 14 C -0.150 4.150 15 C -0.120 4.120 16 C -0.193 4.193 17 C 0.059 3.941 18 F -0.132 7.132 19 H 0.019 0.981 20 H 0.037 0.963 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.100 0.900 25 H 0.162 0.838 26 H 0.177 0.823 27 H 0.179 0.821 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.039 -11.052 3.625 12.022 hybrid contribution 0.439 1.619 -0.126 1.682 sum 3.478 -9.433 3.500 10.646 Atomic orbital electron populations 1.20568 0.82119 0.96363 0.97610 1.44334 1.02364 1.01184 1.85101 1.19430 0.96856 0.85895 1.35411 0.91729 1.25674 0.98689 1.01462 0.99053 1.70249 1.20178 1.26954 1.41057 0.85360 0.78135 0.80191 0.77316 1.20735 1.22065 1.20041 1.19998 0.96430 0.87820 0.90356 1.21261 0.95853 0.96964 1.00882 1.21200 0.98365 0.95499 0.96510 1.21538 0.98551 1.01167 0.93711 1.21293 0.95105 0.94498 1.01061 1.21371 1.03689 1.00888 0.93324 1.18094 0.94188 0.87896 0.93884 1.91445 1.76430 1.58450 1.86867 0.98071 0.96292 0.94359 0.94446 0.93476 0.90006 0.83784 0.82258 0.82126 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.96 9.02 127.77 1.15 10.11 15 2 N -0.61 -31.59 2.91 -731.31 -2.13 -33.72 15 3 C -0.25 -14.13 8.29 84.04 0.70 -13.43 15 4 H 0.06 3.74 7.58 -2.92 -0.02 3.72 15 5 C -0.05 -3.17 5.07 84.86 0.43 -2.74 15 6 N -0.94 -57.39 10.67 21.65 0.23 -57.16 15 7 Si 0.96 47.45 29.58 68.60 2.03 49.48 15 8 H -0.28 -13.42 7.11 99.48 0.71 -12.71 15 9 H -0.29 -14.51 7.11 99.48 0.71 -13.80 15 10 H -0.28 -13.25 7.11 99.48 0.71 -12.54 15 11 C 0.18 7.61 5.57 85.63 0.48 8.09 15 12 C -0.15 -5.81 5.47 -19.82 -0.11 -5.92 15 13 C -0.10 -3.06 9.67 22.26 0.22 -2.84 15 14 C -0.13 -3.43 10.04 22.27 0.22 -3.21 15 15 C -0.10 -2.71 10.04 22.26 0.22 -2.49 15 16 C -0.17 -5.90 10.03 22.31 0.22 -5.67 15 17 C 0.08 3.34 7.21 22.38 0.16 3.50 15 18 F -0.15 -7.38 15.11 44.97 0.68 -6.70 15 19 H 0.00 0.05 7.39 -2.39 -0.02 0.04 15 20 H 0.02 1.01 7.22 -2.39 -0.02 1.00 15 21 H 0.04 1.58 7.83 -2.39 -0.02 1.56 15 22 H 0.25 14.68 8.31 -92.71 -0.77 13.91 15 23 H 0.05 2.03 7.98 -2.39 -0.02 2.01 15 24 H 0.08 2.90 7.67 -2.39 -0.02 2.88 15 25 H 0.14 3.78 8.00 -2.91 -0.02 3.76 15 26 H 0.16 2.85 8.06 -2.91 -0.02 2.83 15 27 H 0.16 2.98 8.06 -2.91 -0.02 2.95 15 28 H 0.14 4.11 8.06 -2.91 -0.02 4.09 15 Total: -1.00 -68.67 246.15 5.65 -63.02 By element: Atomic # 1 Polarization: -1.45 SS G_CDS: 1.14 Total: -0.30 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: 3.69 Total: -14.61 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -1.90 Total: -90.88 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 0.68 Total: -6.70 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -68.67 5.65 -63.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044296901.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.543 kcal (2) G-P(sol) polarization free energy of solvation -68.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds