Wall clock time and date at job start Sun Mar 29 2020 21:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47027 * 2 1 4 4 C 1.36854 * 119.99942 * 95.57775 * 3 2 1 5 5 H 1.07995 * 119.99708 * 219.43973 * 4 3 2 6 6 C 1.38791 * 119.99938 * 39.45042 * 4 3 2 7 7 N 1.31591 * 120.00178 * 20.45426 * 6 4 3 8 8 Si 1.86800 * 119.99624 * 200.45940 * 6 4 3 9 9 H 1.48497 * 109.47398 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47436 * 119.99881 * 8 6 4 11 11 H 1.48504 * 109.47082 * 239.99476 * 8 6 4 12 12 C 1.39289 * 119.99870 * 275.58017 * 3 2 1 13 13 C 1.39120 * 120.07538 * 359.72340 * 12 3 2 14 14 C 1.38046 * 119.95783 * 179.76932 * 13 12 3 15 15 C 1.38315 * 120.11348 * 0.50859 * 14 13 12 16 16 C 1.38536 * 120.15411 * 359.74470 * 15 14 13 17 17 F 1.35107 * 119.97874 * 180.02562 * 16 15 14 18 18 C 1.38284 * 120.04086 * 0.02562 * 16 15 14 19 19 H 1.08997 * 109.47121 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47671 * 300.00635 * 1 2 3 21 21 H 1.08999 * 109.46779 * 60.00425 * 1 2 3 22 22 H 1.08999 * 109.46779 * 119.99575 * 2 1 3 23 23 H 1.08994 * 109.47671 * 239.99365 * 2 1 3 24 24 H 0.96998 * 120.00242 * 180.02562 * 7 6 4 25 25 H 1.07992 * 120.02161 * 0.02562 * 13 12 3 26 26 H 1.08000 * 119.93969 * 180.25317 * 14 13 12 27 27 H 1.07997 * 119.92341 * 179.76549 * 15 14 13 28 28 H 1.08007 * 120.05845 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3550 1.9880 1.1796 5 1 2.1057 3.0259 1.3433 6 6 3.0170 1.2694 2.1653 7 7 3.6716 0.1717 1.8520 8 14 2.9786 1.8606 3.9369 9 1 2.1814 3.1103 4.0246 10 1 2.3602 0.8172 4.7937 11 1 4.3645 2.1244 4.4008 12 6 2.1399 2.0769 -1.2006 13 6 1.8035 1.4597 -2.4011 14 6 1.9203 2.1531 -3.5891 15 6 2.3814 3.4571 -3.5891 16 6 2.7227 4.0745 -2.3968 17 9 3.1722 5.3486 -2.4008 18 6 2.6036 3.3876 -1.2026 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8898 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.8934 -0.5139 -0.8898 24 1 4.1339 -0.3307 2.5410 25 1 1.4472 0.4403 -2.4033 26 1 1.6552 1.6750 -4.5205 27 1 2.4752 3.9954 -4.5206 28 1 2.8692 3.8688 -0.2729 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044349949.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:43 Heat of formation + Delta-G solvation = -30.664471 kcal Electronic energy + Delta-G solvation = -13541.762340 eV Core-core repulsion = 11085.563693 eV Total energy + Delta-G solvation = -2456.198647 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.70961 -40.19821 -37.38497 -34.03904 -32.38040 -30.79315 -29.70118 -26.57095 -24.12315 -23.19355 -21.79318 -19.27995 -18.46662 -17.17767 -16.74045 -16.57808 -16.39210 -15.95053 -15.48628 -14.66477 -14.36803 -14.29764 -13.81166 -13.49786 -13.02185 -12.91502 -12.69494 -12.54284 -12.18571 -12.06214 -11.94511 -11.57696 -11.05124 -10.32042 -9.50523 -8.57919 -8.09055 -5.93586 0.58564 0.85183 1.40286 1.40761 1.52945 2.25659 2.82097 3.06082 3.18409 3.69733 4.20608 4.31651 4.44816 4.57106 4.62488 4.72469 4.84945 4.92612 5.07852 5.26104 5.37142 5.41473 5.50825 5.55560 5.69504 5.80086 6.10114 6.36153 6.76373 7.39107 7.75138 8.67337 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.032071 B = 0.011281 C = 0.009022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.857139 B = 2481.433450 C = 3102.898217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.114 3.886 3 N -0.460 5.460 4 C -0.334 4.334 5 H 0.074 0.926 6 C -0.002 4.002 7 N -0.892 5.892 8 Si 0.979 3.021 9 H -0.266 1.266 10 H -0.271 1.271 11 H -0.281 1.281 12 C 0.218 3.782 13 C -0.244 4.244 14 C -0.033 4.033 15 C -0.260 4.260 16 C 0.129 3.871 17 F -0.157 7.157 18 C -0.273 4.273 19 H 0.079 0.921 20 H 0.041 0.959 21 H 0.054 0.946 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.271 0.729 25 H 0.129 0.871 26 H 0.158 0.842 27 H 0.142 0.858 28 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 0.006 -5.307 6.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 N -0.148 5.148 4 C -0.463 4.463 5 H 0.091 0.909 6 C -0.205 4.205 7 N -0.528 5.528 8 Si 0.803 3.197 9 H -0.190 1.190 10 H -0.196 1.196 11 H -0.207 1.207 12 C 0.103 3.897 13 C -0.267 4.267 14 C -0.052 4.052 15 C -0.282 4.282 16 C 0.109 3.891 17 F -0.136 7.136 18 C -0.298 4.298 19 H 0.098 0.902 20 H 0.060 0.940 21 H 0.073 0.927 22 H 0.094 0.906 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.146 0.854 26 H 0.176 0.824 27 H 0.160 0.840 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.362 -0.276 -4.920 6.581 hybrid contribution 0.445 0.533 1.180 1.370 sum -3.916 0.256 -3.739 5.421 Atomic orbital electron populations 1.22080 0.95591 1.02113 1.01308 1.21408 0.93717 0.83501 1.02287 1.42643 1.58318 1.11751 1.02102 1.19449 1.36501 0.97934 0.92409 0.90872 1.26161 0.93430 0.96904 1.03978 1.70120 1.29406 1.18385 1.34919 0.85093 0.78005 0.78720 0.77905 1.18989 1.19570 1.20652 1.18280 0.92429 0.91381 0.87574 1.20808 1.13455 1.01322 0.91137 1.20894 0.93976 0.92518 0.97790 1.20776 1.13462 0.98051 0.95958 1.17625 0.98129 0.78414 0.94958 1.91382 1.87180 1.37419 1.97576 1.20384 1.15821 0.96604 0.96987 0.90173 0.94002 0.92741 0.90617 0.92534 0.91955 0.85355 0.82399 0.84004 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 10.12 71.98 0.73 -4.70 15 2 C 0.11 5.00 5.29 86.38 0.46 5.45 15 3 N -0.46 -22.81 2.62 -511.87 -1.34 -24.15 15 4 C -0.33 -17.80 8.39 84.04 0.71 -17.10 15 5 H 0.07 3.97 6.94 -2.91 -0.02 3.95 15 6 C 0.00 -0.11 4.90 84.86 0.42 0.31 15 7 N -0.89 -48.00 11.64 21.65 0.25 -47.75 15 8 Si 0.98 41.16 29.60 68.60 2.03 43.19 15 9 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 10 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 15 12 C 0.22 10.19 6.49 38.36 0.25 10.43 15 13 C -0.24 -9.41 8.80 22.44 0.20 -9.21 15 14 C -0.03 -1.07 10.04 22.24 0.22 -0.85 15 15 C -0.26 -9.09 10.02 22.36 0.22 -8.86 15 16 C 0.13 5.35 7.30 22.35 0.16 5.51 15 17 F -0.16 -6.34 17.27 44.97 0.78 -5.57 15 18 C -0.27 -12.89 9.24 22.47 0.21 -12.68 15 19 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 20 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 21 H 0.05 1.84 7.63 -2.39 -0.02 1.83 15 22 H 0.08 3.69 5.71 -2.39 -0.01 3.67 15 23 H 0.06 2.32 6.50 -2.39 -0.02 2.31 15 24 H 0.27 13.68 8.31 -92.71 -0.77 12.91 15 25 H 0.13 4.50 6.08 -2.91 -0.02 4.49 15 26 H 0.16 3.72 8.06 -2.91 -0.02 3.70 15 27 H 0.14 4.06 8.06 -2.91 -0.02 4.04 15 28 H 0.10 5.30 6.49 -2.91 -0.02 5.28 15 Total: -1.00 -57.90 243.09 6.45 -51.45 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.16 Total: 14.52 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 3.57 Total: -31.69 kcal Atomic # 7 Polarization: -70.81 SS G_CDS: -1.09 Total: -71.90 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.78 Total: -5.57 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -57.90 6.45 -51.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044349949.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.783 kcal (2) G-P(sol) polarization free energy of solvation -57.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds