Wall clock time and date at job start Sun Mar 29 2020 21:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47362 * 2 1 4 4 N 1.46903 * 109.47135 * 120.00163 * 2 1 3 5 5 C 1.46906 * 110.99452 * 275.00018 * 4 2 1 6 6 C 1.50703 * 109.46804 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00091 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00067 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00320 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47110 * 89.99657 * 10 8 6 12 12 H 1.48492 * 109.47505 * 209.99919 * 10 8 6 13 13 H 1.48500 * 109.46885 * 330.00336 * 10 8 6 14 14 C 1.50697 * 109.47038 * 239.99946 * 2 1 3 15 15 C 1.39877 * 126.04137 * 279.99791 * 14 2 1 16 16 N 1.30833 * 108.20100 * 180.02562 * 15 14 2 17 17 N 1.40085 * 108.20858 * 0.02562 * 16 15 14 18 18 C 1.46500 * 126.03663 * 179.97438 * 17 16 15 19 19 C 1.34945 * 107.92516 * 0.02562 * 17 16 15 20 20 H 1.09001 * 109.47184 * 59.99980 * 1 2 3 21 21 H 1.09003 * 109.47362 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47149 * 300.00320 * 1 2 3 23 23 H 1.00903 * 111.00277 * 151.04649 * 4 2 1 24 24 H 1.08995 * 109.47187 * 299.99297 * 5 4 2 25 25 H 1.08996 * 109.47246 * 59.99906 * 5 4 2 26 26 H 0.97002 * 120.00139 * 180.02562 * 9 8 6 27 27 H 1.07995 * 125.89269 * 0.02562 * 15 14 2 28 28 H 1.09000 * 109.47005 * 90.02056 * 18 17 16 29 29 H 1.09003 * 109.46946 * 210.02365 * 18 17 16 30 30 H 1.09006 * 109.46968 * 330.02231 * 18 17 16 31 31 H 1.07994 * 126.12681 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5885 -0.5214 3.5557 7 1 2.8381 -1.5695 3.4794 8 6 2.7328 0.1356 4.7592 9 7 2.4284 1.4117 4.8523 10 14 3.3594 -0.7868 6.2578 11 1 4.8404 -0.6938 6.3128 12 1 2.7798 -0.1871 7.4864 13 1 2.9563 -2.2131 6.1654 14 6 2.0323 -0.7104 -1.2304 15 6 2.1215 -2.0957 -1.4022 16 7 2.6027 -2.3294 -2.5961 17 7 2.8359 -1.0984 -3.2227 18 6 3.3737 -0.9061 -4.5718 19 6 2.4787 -0.1209 -2.3637 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 2.9173 -1.1206 1.0288 24 1 2.7588 1.0462 2.1182 25 1 1.0870 0.6164 2.5525 26 1 2.5303 1.8741 5.6989 27 1 1.8414 -2.8432 -0.6747 28 1 2.5532 -0.8720 -5.2885 29 1 3.9299 0.0305 -4.6111 30 1 4.0382 -1.7340 -4.8194 31 1 2.5371 0.9416 -2.5482 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044495543.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:13 Heat of formation + Delta-G solvation = 73.993572 kcal Electronic energy + Delta-G solvation = -13302.777929 eV Core-core repulsion = 11006.870652 eV Total energy + Delta-G solvation = -2295.907277 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.99011 -36.07709 -33.18461 -32.45504 -30.43399 -28.71020 -26.54854 -25.87372 -22.56779 -21.35864 -20.52877 -19.36421 -16.93133 -16.04666 -15.34035 -14.67352 -14.55034 -14.05371 -13.94079 -13.19182 -12.80529 -12.54302 -12.37480 -12.20490 -11.57499 -11.36316 -11.24483 -10.95636 -10.68018 -10.59024 -10.05969 -9.79784 -9.22196 -9.11943 -8.43161 -8.12606 -7.20333 -5.98230 -3.99451 2.05434 2.66625 3.08370 3.35493 3.41399 3.46464 4.47429 4.57695 4.97035 5.04094 5.24397 5.28408 5.37411 5.39315 5.67712 5.89024 5.99592 6.11875 6.22850 6.50574 6.62980 6.83234 6.94205 7.15192 7.35839 7.50452 7.84552 7.91310 8.20979 8.51283 8.70880 9.10538 9.65302 11.12964 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.054225 B = 0.006152 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.246149 B = 4550.406672 C = 4729.304477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.157 3.843 3 H 0.037 0.963 4 N -0.682 5.682 5 C 0.194 3.806 6 C -0.511 4.511 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C -0.222 4.222 15 C 0.071 3.929 16 N -0.309 5.309 17 N -0.386 5.386 18 C 0.106 3.894 19 C 0.047 3.953 20 H 0.041 0.959 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.330 0.670 24 H -0.015 1.015 25 H 0.029 0.971 26 H 0.260 0.740 27 H 0.187 0.813 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 -1.686 -15.738 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.046 3.954 3 H 0.055 0.945 4 N -0.313 5.313 5 C 0.067 3.933 6 C -0.550 4.550 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.726 3.274 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.234 4.234 15 C -0.115 4.115 16 N -0.130 5.130 17 N -0.169 5.169 18 C -0.036 4.036 19 C -0.099 4.099 20 H 0.060 0.940 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.147 0.853 24 H 0.002 0.998 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.204 0.796 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.035 -2.647 -16.432 16.644 hybrid contribution 0.900 0.917 1.187 1.749 sum 0.865 -1.730 -15.246 15.368 Atomic orbital electron populations 1.21716 0.94938 1.01719 1.00254 1.19725 0.94941 0.94301 0.86455 0.94519 1.60755 1.32532 1.34561 1.03448 1.19596 0.96451 0.90219 0.87009 1.21209 1.42963 0.96758 0.94071 0.91974 1.24979 0.95744 0.94894 0.98973 1.69965 1.49035 1.09038 1.25868 0.86502 0.78770 0.80038 0.82120 1.20818 1.21303 1.19755 1.20399 1.11451 0.93768 0.97739 1.23827 0.97484 0.96414 0.93799 1.77316 1.23163 1.03230 1.09304 1.48384 1.50999 1.04114 1.13364 1.21746 0.99261 1.03292 0.79277 1.22280 1.01275 0.95174 0.91133 0.94003 0.92503 0.92410 0.85306 0.99757 0.95259 0.93002 0.79609 0.91218 0.89840 0.89631 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.40 37.16 0.35 -1.83 16 2 C 0.16 2.86 3.05 -68.87 -0.21 2.65 16 3 H 0.04 0.70 7.79 -51.93 -0.40 0.29 16 4 N -0.68 -14.77 6.09 -109.22 -0.67 -15.43 16 5 C 0.19 5.12 5.24 -4.97 -0.03 5.09 16 6 C -0.51 -14.63 9.32 -34.44 -0.32 -14.95 16 7 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 10 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 C -0.22 -3.58 4.81 -105.05 -0.51 -4.08 16 15 C 0.07 1.15 11.46 -17.36 -0.20 0.95 16 16 N -0.31 -4.94 12.57 30.62 0.39 -4.56 16 17 N -0.39 -5.17 4.01 -68.16 -0.27 -5.44 16 18 C 0.11 0.88 11.47 59.85 0.69 1.56 16 19 C 0.05 0.65 11.40 -17.22 -0.20 0.45 16 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.06 1.06 7.45 -51.93 -0.39 0.67 16 23 H 0.33 7.05 8.14 -39.29 -0.32 6.73 16 24 H -0.02 -0.43 8.05 -51.93 -0.42 -0.85 16 25 H 0.03 0.83 7.44 -51.93 -0.39 0.44 16 26 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.19 2.84 8.06 -52.49 -0.42 2.42 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.17 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 270.25 15.07 4.07 4.07 Total: -1.00 -32.29 270.25 -5.71 -37.99 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.42 Total: 1.48 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -0.52 Total: -8.66 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.18 Total: -51.77 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.29 -5.71 -37.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044495543.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.985 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds