Wall clock time and date at job start Sun Mar 29 2020 21:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47362 * 2 1 4 4 N 1.46903 * 109.47135 * 120.00163 * 2 1 3 5 5 C 1.46906 * 110.99452 * 275.00018 * 4 2 1 6 6 C 1.50703 * 109.46804 * 180.02562 * 5 4 2 7 7 H 1.08002 * 119.99960 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00091 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00067 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00320 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47110 * 89.99657 * 10 8 6 12 12 H 1.48492 * 109.47505 * 209.99919 * 10 8 6 13 13 H 1.48500 * 109.46885 * 330.00336 * 10 8 6 14 14 C 1.50697 * 109.47038 * 239.99946 * 2 1 3 15 15 C 1.39877 * 126.04137 * 279.99791 * 14 2 1 16 16 N 1.30833 * 108.20100 * 180.02562 * 15 14 2 17 17 N 1.40085 * 108.20858 * 0.02562 * 16 15 14 18 18 C 1.46500 * 126.03663 * 179.97438 * 17 16 15 19 19 C 1.34945 * 107.92516 * 0.02562 * 17 16 15 20 20 H 1.09001 * 109.47184 * 59.99980 * 1 2 3 21 21 H 1.09003 * 109.47362 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47149 * 300.00320 * 1 2 3 23 23 H 1.00903 * 111.00277 * 151.04649 * 4 2 1 24 24 H 1.08995 * 109.47187 * 299.99297 * 5 4 2 25 25 H 1.08996 * 109.47246 * 59.99906 * 5 4 2 26 26 H 0.97002 * 120.00139 * 180.02562 * 9 8 6 27 27 H 1.07995 * 125.89269 * 0.02562 * 15 14 2 28 28 H 1.09000 * 109.47005 * 90.02056 * 18 17 16 29 29 H 1.09003 * 109.46946 * 210.02365 * 18 17 16 30 30 H 1.09006 * 109.46968 * 330.02231 * 18 17 16 31 31 H 1.07994 * 126.12681 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0824 0.2227 2.3469 6 6 2.5885 -0.5214 3.5557 7 1 2.8381 -1.5695 3.4794 8 6 2.7328 0.1356 4.7592 9 7 2.4284 1.4117 4.8523 10 14 3.3594 -0.7868 6.2578 11 1 4.8404 -0.6938 6.3128 12 1 2.7798 -0.1871 7.4864 13 1 2.9563 -2.2131 6.1654 14 6 2.0323 -0.7104 -1.2304 15 6 2.1215 -2.0957 -1.4022 16 7 2.6027 -2.3294 -2.5961 17 7 2.8359 -1.0984 -3.2227 18 6 3.3737 -0.9061 -4.5718 19 6 2.4787 -0.1209 -2.3637 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 2.9173 -1.1206 1.0288 24 1 2.7588 1.0462 2.1182 25 1 1.0870 0.6164 2.5525 26 1 2.5303 1.8741 5.6989 27 1 1.8414 -2.8432 -0.6747 28 1 2.5532 -0.8720 -5.2885 29 1 3.9299 0.0305 -4.6111 30 1 4.0382 -1.7340 -4.8194 31 1 2.5371 0.9416 -2.5482 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044495543.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:12 Heat of formation + Delta-G solvation = 51.097308 kcal Electronic energy + Delta-G solvation = -13303.770786 eV Core-core repulsion = 11006.870652 eV Total energy + Delta-G solvation = -2296.900134 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.12155 -37.70577 -34.96591 -33.80590 -32.03791 -30.00215 -28.08689 -27.30966 -24.31495 -22.88645 -21.73673 -20.68663 -18.67936 -17.58814 -16.65593 -16.30797 -16.09832 -15.45541 -15.18314 -14.77123 -14.21692 -13.74609 -13.64888 -13.41255 -13.33013 -12.97441 -12.84691 -12.64313 -12.37730 -12.23002 -11.87171 -11.38550 -11.21683 -10.61990 -10.30659 -9.29426 -9.03433 -8.18682 -6.29033 0.96077 1.43185 1.44802 1.56702 1.74240 1.85751 2.43297 3.14676 3.54430 3.78830 4.06407 4.30025 4.43740 4.46976 4.49832 4.69009 4.71429 4.88822 4.91151 5.08240 5.13358 5.27142 5.37116 5.45710 5.68355 5.71725 6.09309 6.17759 6.55590 6.74276 6.83073 6.95906 7.41809 8.92879 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.054225 B = 0.006152 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.246149 B = 4550.406672 C = 4729.304477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.160 3.840 3 H 0.030 0.970 4 N -0.678 5.678 5 C 0.210 3.790 6 C -0.534 4.534 7 H 0.063 0.937 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.971 3.029 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.265 1.265 14 C -0.249 4.249 15 C 0.060 3.940 16 N -0.332 5.332 17 N -0.380 5.380 18 C 0.094 3.906 19 C 0.064 3.936 20 H 0.069 0.931 21 H 0.054 0.946 22 H 0.035 0.965 23 H 0.332 0.668 24 H -0.042 1.042 25 H 0.004 0.996 26 H 0.264 0.736 27 H 0.184 0.816 28 H 0.088 0.912 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.820 -1.916 -16.844 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 H 0.048 0.952 4 N -0.309 5.309 5 C 0.083 3.917 6 C -0.572 4.572 7 H 0.081 0.919 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.796 3.204 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.190 1.190 14 C -0.261 4.261 15 C -0.126 4.126 16 N -0.155 5.155 17 N -0.162 5.162 18 C -0.045 4.045 19 C -0.084 4.084 20 H 0.088 0.912 21 H 0.073 0.927 22 H 0.054 0.946 23 H 0.149 0.851 24 H -0.024 1.024 25 H 0.022 0.978 26 H 0.073 0.927 27 H 0.201 0.799 28 H 0.107 0.893 29 H 0.131 0.869 30 H 0.108 0.892 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.601 -2.900 -17.580 17.828 hybrid contribution 0.710 1.031 1.383 1.865 sum 1.311 -1.869 -16.197 16.357 Atomic orbital electron populations 1.21663 0.94143 1.01681 1.00503 1.19682 0.95505 0.93798 0.86065 0.95247 1.60649 1.32551 1.33797 1.03916 1.19228 0.94050 0.89958 0.88507 1.21570 1.43389 0.97006 0.95251 0.91910 1.25916 0.95674 0.95755 1.02262 1.70089 1.49816 1.10660 1.26908 0.85356 0.78419 0.78791 0.77864 1.19815 1.20696 1.18964 1.20178 1.14136 0.93827 0.97923 1.23830 0.98019 0.96561 0.94156 1.77260 1.23884 1.04947 1.09377 1.48798 1.49602 1.03166 1.14627 1.22195 1.00309 1.05046 0.76998 1.22721 0.98921 0.96642 0.90079 0.91213 0.92653 0.94601 0.85129 1.02402 0.97765 0.92684 0.79934 0.89350 0.86870 0.89180 0.77961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.12 9.40 71.98 0.68 -3.45 16 2 C 0.16 5.84 3.05 44.17 0.13 5.98 16 3 H 0.03 1.12 7.79 -2.39 -0.02 1.10 16 4 N -0.68 -29.99 6.09 -499.45 -3.04 -33.04 16 5 C 0.21 11.47 5.24 85.56 0.45 11.92 16 6 C -0.53 -31.01 9.32 25.60 0.24 -30.77 16 7 H 0.06 3.56 7.81 -2.91 -0.02 3.53 16 8 C 0.00 0.11 5.46 84.65 0.46 0.57 16 9 N -0.93 -57.01 13.29 21.44 0.28 -56.73 16 10 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 14 C -0.25 -7.76 4.81 -20.14 -0.10 -7.86 16 15 C 0.06 1.90 11.46 85.24 0.98 2.88 16 16 N -0.33 -10.22 12.57 -57.02 -0.72 -10.94 16 17 N -0.38 -9.17 4.01 -369.56 -1.48 -10.66 16 18 C 0.09 1.23 11.47 127.77 1.47 2.69 16 19 C 0.06 1.59 11.40 83.54 0.95 2.54 16 20 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 21 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.03 1.34 7.45 -2.39 -0.02 1.32 16 23 H 0.33 14.41 8.14 -89.69 -0.73 13.68 16 24 H -0.04 -2.44 8.05 -2.39 -0.02 -2.46 16 25 H 0.00 0.25 7.44 -2.39 -0.02 0.23 16 26 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 27 H 0.18 5.68 8.06 -2.91 -0.02 5.66 16 28 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.20 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -69.75 270.25 2.70 -67.05 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.38 Total: 12.87 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: 5.26 Total: -15.50 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -4.96 Total: -111.36 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -69.75 2.70 -67.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044495543.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.146 kcal (2) G-P(sol) polarization free energy of solvation -69.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds