Wall clock time and date at job start Sun Mar 29 2020 21:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34519 * 125.79183 * 2 1 4 4 C 1.41379 * 106.84172 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.57636 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47150 * 145.02814 * 5 4 3 7 7 C 1.52997 * 109.47247 * 265.02528 * 5 4 3 8 8 N 1.46498 * 109.47114 * 25.02495 * 5 4 3 9 9 C 1.36943 * 119.99752 * 154.72127 * 8 5 4 10 10 H 1.08002 * 119.99793 * 0.27665 * 9 8 5 11 11 C 1.38811 * 120.00012 * 180.27737 * 9 8 5 12 12 N 1.31624 * 119.99698 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00072 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47159 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47290 * 120.00044 * 13 11 9 16 16 H 1.48503 * 109.47163 * 240.00049 * 13 11 9 17 17 C 1.34515 * 106.84376 * 0.22427 * 4 3 2 18 18 C 1.50696 * 125.79067 * 179.77125 * 17 4 3 19 19 O 1.34305 * 108.42039 * 359.63494 * 17 4 3 20 20 H 1.09000 * 109.46670 * 90.01044 * 1 2 3 21 21 H 1.09002 * 109.47113 * 210.00098 * 1 2 3 22 22 H 1.08991 * 109.47276 * 330.00301 * 1 2 3 23 23 H 1.07998 * 126.57442 * 0.05272 * 3 2 1 24 24 H 1.09003 * 109.47189 * 300.00333 * 7 5 4 25 25 H 1.09009 * 109.47238 * 60.00212 * 7 5 4 26 26 H 1.08997 * 109.47293 * 180.02562 * 7 5 4 27 27 H 0.97001 * 120.00384 * 335.00482 * 8 5 4 28 28 H 0.96999 * 119.99739 * 180.02562 * 12 11 9 29 29 H 1.08996 * 109.46954 * 90.00133 * 18 17 4 30 30 H 1.09005 * 109.46975 * 210.00495 * 18 17 4 31 31 H 1.09003 * 109.46772 * 330.00045 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6320 -0.0006 5 6 4.8732 1.4850 -0.0014 6 1 5.6497 0.9965 0.5874 7 6 5.3638 1.6704 -1.4387 8 7 4.5677 2.7933 0.5828 9 6 5.5632 3.5334 1.1630 10 1 6.5743 3.1546 1.1858 11 6 5.2727 4.7705 1.7216 12 7 4.0402 5.2318 1.6942 13 14 6.6307 5.7804 2.5123 14 1 7.9167 5.0446 2.4128 15 1 6.7510 7.0836 1.8106 16 1 6.3040 6.0161 3.9417 17 6 3.5814 -0.7122 -0.0060 18 6 4.7706 -1.6378 -0.0134 19 8 2.2925 -1.0895 -0.0005 20 1 -0.3633 -0.0002 -1.0277 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5137 23 1 1.9665 2.1204 0.0008 24 1 5.5911 0.6970 -1.8734 25 1 4.5873 2.1589 -2.0275 26 1 6.2626 2.2869 -1.4392 27 1 3.6595 3.1335 0.5624 28 1 3.8373 6.0964 2.0843 29 1 5.0604 -1.8652 1.0124 30 1 4.5091 -2.5612 -0.5304 31 1 5.6024 -1.1565 -0.5279 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044730539.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:06 Heat of formation + Delta-G solvation = 12.053381 kcal Electronic energy + Delta-G solvation = -13691.699536 eV Core-core repulsion = 11360.813579 eV Total energy + Delta-G solvation = -2330.885957 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.12550 -35.90544 -32.85060 -32.59057 -30.86346 -29.15678 -28.20082 -24.50653 -23.84169 -22.00167 -20.19173 -18.77228 -16.89983 -15.98538 -15.86482 -14.60507 -13.95893 -13.67341 -13.25012 -13.13302 -12.95117 -12.59863 -12.43837 -12.33858 -12.03430 -11.94682 -11.32874 -11.28191 -10.83712 -10.66179 -10.32041 -9.97296 -9.64402 -9.10759 -8.81668 -7.67951 -6.91809 -5.73393 -3.01238 2.15469 3.15758 3.33463 3.45328 3.50551 3.52897 4.62070 5.02982 5.28760 5.42277 5.44206 5.59381 5.61184 5.70002 5.73730 5.79548 5.96636 5.97473 6.18303 6.26807 6.42416 6.45857 6.66582 6.77146 6.91561 7.07392 7.16509 7.65568 7.74220 8.45763 9.56812 10.15492 10.51283 11.49789 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.038402 B = 0.008435 C = 0.007423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.947002 B = 3318.865417 C = 3771.059111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.038 4.038 3 C -0.182 4.182 4 C -0.151 4.151 5 C 0.236 3.764 6 H 0.053 0.947 7 C -0.158 4.158 8 N -0.721 5.721 9 C -0.236 4.236 10 H 0.071 0.929 11 C -0.015 4.015 12 N -0.933 5.933 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.292 1.292 17 C -0.038 4.038 18 C -0.065 4.065 19 O -0.182 6.182 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.148 0.852 24 H 0.036 0.964 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.385 0.615 28 H 0.254 0.746 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.184 -11.846 -4.467 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.087 4.087 3 C -0.202 4.202 4 C -0.153 4.153 5 C 0.126 3.874 6 H 0.071 0.929 7 C -0.218 4.218 8 N -0.362 5.362 9 C -0.367 4.367 10 H 0.089 0.911 11 C -0.211 4.211 12 N -0.582 5.582 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 C -0.088 4.088 18 C -0.122 4.122 19 O -0.081 6.081 20 H 0.093 0.907 21 H 0.088 0.912 22 H 0.105 0.895 23 H 0.165 0.835 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.219 0.781 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.117 -12.063 -4.386 13.209 hybrid contribution 0.399 1.033 0.471 1.204 sum -2.718 -11.030 -3.915 12.015 Atomic orbital electron populations 1.20192 0.85616 1.03566 1.02843 1.22226 0.93614 0.84297 1.08567 1.21465 0.92374 0.99432 1.06910 1.20759 0.96670 0.92933 1.04923 1.18592 0.90016 0.86120 0.92685 0.92908 1.22392 1.01318 0.99396 0.98678 1.42424 1.09649 1.15666 1.68506 1.19311 0.90058 0.98389 1.28937 0.91070 1.24734 0.96447 0.98029 1.01902 1.69677 1.17540 1.20081 1.50890 0.86116 0.81068 0.80200 0.78823 1.20557 1.21916 1.21931 1.22005 0.83021 0.94192 1.09580 1.20207 0.91771 0.97180 1.03028 1.83853 1.16332 1.34974 1.72924 0.90741 0.91206 0.89530 0.83453 0.94510 0.93408 0.92539 0.78064 0.93628 0.90639 0.91324 0.89477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.42 36.00 0.38 -0.41 16 2 C -0.04 -0.64 7.32 -35.62 -0.26 -0.90 16 3 C -0.18 -3.54 9.97 -39.70 -0.40 -3.94 16 4 C -0.15 -2.99 5.26 -104.74 -0.55 -3.54 16 5 C 0.24 5.06 2.89 -69.08 -0.20 4.86 16 6 H 0.05 1.13 7.96 -51.93 -0.41 0.71 16 7 C -0.16 -3.03 9.48 37.16 0.35 -2.68 16 8 N -0.72 -18.88 5.10 -54.55 -0.28 -19.16 16 9 C -0.24 -6.69 9.93 -15.06 -0.15 -6.84 16 10 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 11 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 12 N -0.93 -28.61 13.06 55.49 0.72 -27.89 16 13 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 C -0.04 -0.67 7.32 -35.63 -0.26 -0.93 16 18 C -0.07 -0.85 10.12 36.00 0.36 -0.49 16 19 O -0.18 -3.19 10.65 5.68 0.06 -3.13 16 20 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.15 2.94 7.24 -52.49 -0.38 2.56 16 24 H 0.04 0.59 7.73 -51.93 -0.40 0.19 16 25 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.38 10.63 6.32 -40.82 -0.26 10.38 16 28 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 1.06 7.46 -51.93 -0.39 0.68 16 LS Contribution 267.72 15.07 4.03 4.03 Total: -1.00 -32.04 267.72 -5.65 -37.69 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -4.34 Total: 6.20 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -0.82 Total: -15.41 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.45 Total: -47.05 kcal Atomic # 8 Polarization: -3.19 SS G_CDS: 0.06 Total: -3.13 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.04 -5.65 -37.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044730539.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.746 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds