Wall clock time and date at job start Sun Mar 29 2020 21:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34511 * 125.79252 * 2 1 4 4 C 1.41386 * 106.84141 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.57786 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47139 * 220.00634 * 5 4 3 7 7 C 1.53002 * 109.46652 * 100.00335 * 5 4 3 8 8 N 1.46503 * 109.47152 * 340.00658 * 5 4 3 9 9 C 1.36936 * 119.99717 * 204.99533 * 8 5 4 10 10 H 1.08002 * 120.00352 * 0.02562 * 9 8 5 11 11 C 1.38815 * 120.00048 * 180.02562 * 9 8 5 12 12 N 1.31618 * 119.99651 * 0.02562 * 11 9 8 13 13 Si 1.86790 * 120.00352 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47319 * 60.00048 * 13 11 9 15 15 H 1.48504 * 109.47228 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47212 * 299.99926 * 13 11 9 17 17 C 1.34507 * 106.84010 * 0.02562 * 4 3 2 18 18 C 1.50703 * 125.78834 * 180.26118 * 17 4 3 19 19 O 1.34304 * 108.42311 * 359.97438 * 17 4 3 20 20 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47442 * 300.00243 * 1 2 3 22 22 H 1.09007 * 109.46556 * 60.00173 * 1 2 3 23 23 H 1.08000 * 126.57995 * 0.02562 * 3 2 1 24 24 H 1.09007 * 109.46857 * 179.97438 * 7 5 4 25 25 H 1.08998 * 109.47592 * 300.00021 * 7 5 4 26 26 H 1.09004 * 109.46757 * 60.00424 * 7 5 4 27 27 H 0.97002 * 119.99893 * 25.00169 * 8 5 4 28 28 H 0.97003 * 119.99952 * 179.97438 * 12 11 9 29 29 H 1.08998 * 109.47395 * 179.71425 * 18 17 4 30 30 H 1.09004 * 109.47316 * 299.71258 * 18 17 4 31 31 H 1.08995 * 109.47160 * 59.71311 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 0.0006 5 6 4.8733 1.4849 0.0003 6 1 5.6185 1.0411 -0.6599 7 6 5.4352 1.5678 1.4210 8 7 4.5414 2.8310 -0.4730 9 6 5.5093 3.6146 -1.0424 10 1 6.5173 3.2401 -1.1430 11 6 5.1950 4.8903 -1.4903 12 7 3.9667 5.3469 -1.3673 13 14 6.5151 5.9590 -2.2677 14 1 7.0566 5.2793 -3.4719 15 1 5.9276 7.2657 -2.6585 16 1 7.6107 6.1818 -1.2903 17 6 3.5813 -0.7123 0.0004 18 6 4.7705 -1.6380 0.0064 19 8 2.2924 -1.0895 0.0002 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.9666 2.1204 0.0004 24 1 6.3341 2.1844 1.4207 25 1 4.6900 2.0116 2.0812 26 1 5.6822 0.5662 1.7730 27 1 3.6359 3.1673 -0.3829 28 1 3.7471 6.2385 -1.6800 29 1 4.4260 -2.6721 0.0098 30 1 5.3747 -1.4593 -0.8831 31 1 5.3711 -1.4522 0.8968 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044730540.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:07 Heat of formation + Delta-G solvation = 12.451913 kcal Electronic energy + Delta-G solvation = -13693.977908 eV Core-core repulsion = 11363.109233 eV Total energy + Delta-G solvation = -2330.868675 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.12320 -35.89942 -32.84952 -32.58099 -30.85566 -29.16240 -28.19335 -24.50144 -23.84324 -21.98362 -20.18791 -18.77441 -16.89389 -15.97766 -15.85530 -14.58996 -13.93894 -13.66856 -13.25067 -13.13100 -12.98183 -12.60116 -12.45382 -12.36436 -12.02802 -11.90740 -11.31730 -11.27701 -10.80111 -10.66383 -10.33800 -10.01509 -9.62584 -9.10119 -8.79957 -7.67487 -6.91541 -5.72736 -3.00629 2.16144 3.16445 3.34213 3.46504 3.50408 3.51572 4.62424 5.03122 5.29344 5.40506 5.44917 5.59869 5.63684 5.68304 5.73024 5.80468 5.97342 5.97875 6.18911 6.26178 6.42279 6.47584 6.67773 6.78349 6.92663 7.07860 7.17210 7.65660 7.73912 8.46485 9.57317 10.16049 10.51907 11.50354 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.038486 B = 0.008457 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.365054 B = 3310.236365 C = 3787.952573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.038 4.038 3 C -0.183 4.183 4 C -0.151 4.151 5 C 0.236 3.764 6 H 0.053 0.947 7 C -0.157 4.157 8 N -0.721 5.721 9 C -0.237 4.237 10 H 0.070 0.930 11 C -0.015 4.015 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.291 1.291 16 H -0.286 1.286 17 C -0.039 4.039 18 C -0.064 4.064 19 O -0.182 6.182 20 H 0.068 0.932 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.148 0.852 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.385 0.615 28 H 0.255 0.745 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.034 -12.110 3.712 13.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.087 4.087 3 C -0.202 4.202 4 C -0.153 4.153 5 C 0.126 3.874 6 H 0.071 0.929 7 C -0.218 4.218 8 N -0.363 5.363 9 C -0.368 4.368 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.582 5.582 13 Si 0.738 3.262 14 H -0.213 1.213 15 H -0.217 1.217 16 H -0.213 1.213 17 C -0.089 4.089 18 C -0.121 4.121 19 O -0.081 6.081 20 H 0.087 0.913 21 H 0.099 0.901 22 H 0.100 0.900 23 H 0.166 0.834 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.219 0.781 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.986 -12.309 3.625 13.175 hybrid contribution 0.409 1.059 -0.415 1.209 sum -2.577 -11.250 3.210 11.980 Atomic orbital electron populations 1.20193 0.85622 1.03073 1.03334 1.22221 0.93615 0.84299 1.08606 1.21458 0.92350 0.99499 1.06883 1.20757 0.96669 0.92928 1.04949 1.18580 0.89784 0.85619 0.93372 0.92908 1.22380 1.01187 0.99240 0.98945 1.42411 1.11043 1.10984 1.71844 1.19217 0.91205 0.95262 1.31165 0.91187 1.24728 0.96518 0.97666 1.02132 1.69653 1.17625 1.18184 1.52785 0.86261 0.80843 0.79862 0.79186 1.21319 1.21722 1.21296 1.21986 0.83020 0.94192 1.09695 1.20199 0.91613 0.96875 1.03406 1.83865 1.16331 1.34979 1.72883 0.91276 0.90143 0.90019 0.83384 0.92543 0.93441 0.94504 0.78054 0.93522 0.91383 0.90023 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.42 36.00 0.38 -0.42 16 2 C -0.04 -0.64 7.32 -35.63 -0.26 -0.90 16 3 C -0.18 -3.56 9.97 -39.70 -0.40 -3.96 16 4 C -0.15 -3.00 5.30 -104.74 -0.55 -3.55 16 5 C 0.24 5.08 3.06 -69.08 -0.21 4.87 16 6 H 0.05 1.13 8.07 -51.93 -0.42 0.71 16 7 C -0.16 -3.03 9.47 37.16 0.35 -2.68 16 8 N -0.72 -18.91 5.08 -54.55 -0.28 -19.19 16 9 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 11 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 12 N -0.93 -28.62 13.06 55.49 0.72 -27.90 16 13 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 C -0.04 -0.68 7.32 -35.63 -0.26 -0.94 16 18 C -0.06 -0.83 10.12 36.01 0.36 -0.47 16 19 O -0.18 -3.18 10.65 5.70 0.06 -3.12 16 20 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 23 H 0.15 3.00 7.11 -52.49 -0.37 2.62 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.59 7.47 -51.93 -0.39 0.20 16 27 H 0.38 10.63 6.20 -40.82 -0.25 10.38 16 28 H 0.25 7.56 8.31 -40.82 -0.34 7.23 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.94 7.47 -51.93 -0.39 0.56 16 LS Contribution 267.53 15.07 4.03 4.03 Total: -1.00 -32.00 267.53 -5.65 -37.65 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -4.33 Total: 6.32 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -0.84 Total: -15.47 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.45 Total: -47.09 kcal Atomic # 8 Polarization: -3.18 SS G_CDS: 0.06 Total: -3.12 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.00 -5.65 -37.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044730540.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.102 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds