Wall clock time and date at job start Sun Mar 29 2020 21:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34511 * 125.79252 * 2 1 4 4 C 1.41386 * 106.84141 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.57786 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47139 * 220.00634 * 5 4 3 7 7 C 1.53002 * 109.46652 * 100.00335 * 5 4 3 8 8 N 1.46503 * 109.47152 * 340.00658 * 5 4 3 9 9 C 1.36936 * 119.99717 * 204.99533 * 8 5 4 10 10 H 1.08002 * 120.00352 * 0.02562 * 9 8 5 11 11 C 1.38815 * 120.00048 * 180.02562 * 9 8 5 12 12 N 1.31618 * 119.99651 * 0.02562 * 11 9 8 13 13 Si 1.86790 * 120.00352 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47319 * 60.00048 * 13 11 9 15 15 H 1.48504 * 109.47228 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.47212 * 299.99926 * 13 11 9 17 17 C 1.34507 * 106.84010 * 0.02562 * 4 3 2 18 18 C 1.50703 * 125.78834 * 180.26118 * 17 4 3 19 19 O 1.34304 * 108.42311 * 359.97438 * 17 4 3 20 20 H 1.09001 * 109.47045 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47442 * 300.00243 * 1 2 3 22 22 H 1.09007 * 109.46556 * 60.00173 * 1 2 3 23 23 H 1.08000 * 126.57995 * 0.02562 * 3 2 1 24 24 H 1.09007 * 109.46857 * 179.97438 * 7 5 4 25 25 H 1.08998 * 109.47592 * 300.00021 * 7 5 4 26 26 H 1.09004 * 109.46757 * 60.00424 * 7 5 4 27 27 H 0.97002 * 119.99893 * 25.00169 * 8 5 4 28 28 H 0.97003 * 119.99952 * 179.97438 * 12 11 9 29 29 H 1.08998 * 109.47395 * 179.71425 * 18 17 4 30 30 H 1.09004 * 109.47316 * 299.71258 * 18 17 4 31 31 H 1.08995 * 109.47160 * 59.71311 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6309 0.6319 0.0006 5 6 4.8733 1.4849 0.0003 6 1 5.6185 1.0411 -0.6599 7 6 5.4352 1.5678 1.4210 8 7 4.5414 2.8310 -0.4730 9 6 5.5093 3.6146 -1.0424 10 1 6.5173 3.2401 -1.1430 11 6 5.1950 4.8903 -1.4903 12 7 3.9667 5.3469 -1.3673 13 14 6.5151 5.9590 -2.2677 14 1 7.0566 5.2793 -3.4719 15 1 5.9276 7.2657 -2.6585 16 1 7.6107 6.1818 -1.2903 17 6 3.5813 -0.7123 0.0004 18 6 4.7705 -1.6380 0.0064 19 8 2.2924 -1.0895 0.0002 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.9666 2.1204 0.0004 24 1 6.3341 2.1844 1.4207 25 1 4.6900 2.0116 2.0812 26 1 5.6822 0.5662 1.7730 27 1 3.6359 3.1673 -0.3829 28 1 3.7471 6.2385 -1.6800 29 1 4.4260 -2.6721 0.0098 30 1 5.3747 -1.4593 -0.8831 31 1 5.3711 -1.4522 0.8968 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044730540.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:07 Heat of formation + Delta-G solvation = -7.786612 kcal Electronic energy + Delta-G solvation = -13694.855516 eV Core-core repulsion = 11363.109233 eV Total energy + Delta-G solvation = -2331.746284 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.50195 -37.66060 -34.69699 -33.82414 -32.60027 -30.26709 -30.02886 -26.15267 -25.48305 -23.54530 -21.71673 -20.38859 -18.85497 -17.42183 -17.20554 -16.51008 -15.58031 -15.37081 -14.85409 -14.33708 -14.17301 -14.08529 -13.73223 -13.57131 -13.45155 -13.19728 -13.06059 -12.76184 -12.62683 -12.38482 -12.21919 -11.80486 -11.66535 -11.06015 -10.43295 -9.11225 -8.93000 -7.93718 -5.22503 0.82195 1.46454 1.50242 1.56143 1.70044 2.07832 2.56479 3.39933 3.80901 3.89019 4.00989 4.21738 4.45672 4.50809 4.55334 4.70032 4.73082 4.76554 4.80570 4.94219 4.96680 5.08964 5.18835 5.31896 5.44769 5.48936 5.54360 5.68781 6.24792 6.32387 7.33772 8.09879 8.35093 9.30260 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.038486 B = 0.008457 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.365054 B = 3310.236365 C = 3787.952573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.025 4.025 3 C -0.222 4.222 4 C -0.186 4.186 5 C 0.234 3.766 6 H 0.053 0.947 7 C -0.146 4.146 8 N -0.736 5.736 9 C -0.242 4.242 10 H 0.079 0.921 11 C -0.079 4.079 12 N -0.972 5.972 13 Si 0.976 3.024 14 H -0.278 1.278 15 H -0.296 1.296 16 H -0.276 1.276 17 C -0.029 4.029 18 C -0.066 4.066 19 O -0.181 6.181 20 H 0.092 0.908 21 H 0.096 0.904 22 H 0.090 0.910 23 H 0.127 0.873 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.073 0.927 27 H 0.373 0.627 28 H 0.250 0.750 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -13.914 3.854 14.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.242 4.242 4 C -0.188 4.188 5 C 0.126 3.874 6 H 0.071 0.929 7 C -0.206 4.206 8 N -0.377 5.377 9 C -0.373 4.373 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.622 5.622 13 Si 0.805 3.195 14 H -0.204 1.204 15 H -0.222 1.222 16 H -0.202 1.202 17 C -0.078 4.078 18 C -0.122 4.122 19 O -0.079 6.079 20 H 0.111 0.889 21 H 0.115 0.885 22 H 0.109 0.891 23 H 0.145 0.855 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.205 0.795 28 H 0.059 0.941 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.381 -14.163 3.784 14.852 hybrid contribution 0.191 1.518 -0.431 1.590 sum -2.190 -12.644 3.353 13.263 Atomic orbital electron populations 1.20412 0.82226 1.05006 1.04533 1.22911 0.95400 0.83244 1.05902 1.21446 0.93318 0.99462 1.09936 1.20687 0.96049 0.94119 1.07968 1.18711 0.90832 0.83690 0.94168 0.92891 1.22217 0.99990 1.01121 0.97262 1.42633 1.10147 1.12739 1.72140 1.19647 0.91920 0.95637 1.30137 0.90356 1.25596 0.98713 0.99232 1.03527 1.69831 1.19691 1.18278 1.54447 0.85172 0.78257 0.77606 0.78494 1.20383 1.22222 1.20226 1.22640 0.84002 0.93962 1.07242 1.20424 0.89982 0.97317 1.04472 1.83911 1.16520 1.34989 1.72519 0.88920 0.88539 0.89132 0.85508 0.93568 0.94782 0.90799 0.79477 0.94098 0.88881 0.89320 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 10.42 71.24 0.74 -0.70 16 2 C -0.02 -0.82 7.32 24.83 0.18 -0.64 16 3 C -0.22 -8.84 9.97 22.19 0.22 -8.62 16 4 C -0.19 -7.37 5.30 -19.94 -0.11 -7.48 16 5 C 0.23 10.08 3.06 44.25 0.14 10.22 16 6 H 0.05 2.24 8.07 -2.39 -0.02 2.22 16 7 C -0.15 -5.53 9.47 71.98 0.68 -4.85 16 8 N -0.74 -39.56 5.08 -326.49 -1.66 -41.22 16 9 C -0.24 -13.89 9.93 84.03 0.83 -13.05 16 10 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 11 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 12 N -0.97 -61.17 13.06 21.65 0.28 -60.89 16 13 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 14 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 15 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 C -0.03 -0.94 7.32 24.83 0.18 -0.76 16 18 C -0.07 -1.49 10.12 71.24 0.72 -0.76 16 19 O -0.18 -5.96 10.65 -2.51 -0.03 -5.98 16 20 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 21 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 23 H 0.13 5.49 7.11 -2.91 -0.02 5.47 16 24 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 2.21 7.47 -2.38 -0.02 2.19 16 27 H 0.37 21.53 6.20 -92.71 -0.58 20.96 16 28 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.10 1.90 7.47 -2.39 -0.02 1.88 16 Total: -1.00 -69.57 267.53 5.22 -64.34 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 0.54 Total: 25.49 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 4.06 Total: -30.83 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -1.38 Total: -102.11 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.03 Total: -5.98 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -69.57 5.22 -64.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044730540.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.556 kcal (2) G-P(sol) polarization free energy of solvation -69.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds