Wall clock time and date at job start Sun Mar 29 2020 21:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36987 * 120.00247 * 2 1 4 4 H 1.08003 * 119.99675 * 203.09420 * 3 2 1 5 5 C 1.38970 * 120.00149 * 23.09092 * 3 2 1 6 6 N 1.31420 * 119.99785 * 14.71447 * 5 3 2 7 7 Si 1.86794 * 120.00109 * 194.71055 * 5 3 2 8 8 H 1.48504 * 109.46943 * 60.00470 * 7 5 3 9 9 H 1.48503 * 109.46913 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47532 * 299.99969 * 7 5 3 11 11 C 1.34780 * 119.99845 * 180.02562 * 2 1 3 12 12 O 1.21630 * 119.99827 * 185.49485 * 11 2 1 13 13 C 1.47352 * 119.99828 * 5.48802 * 11 2 1 14 14 C 1.41321 * 126.42360 * 338.05440 * 13 11 2 15 15 N 1.30446 * 108.02581 * 180.02562 * 14 13 11 16 16 N 1.39930 * 108.91467 * 359.76653 * 15 14 13 17 17 C 1.46505 * 125.75134 * 180.25682 * 16 15 14 18 18 C 1.34289 * 108.50043 * 0.39007 * 16 15 14 19 19 H 1.08999 * 109.47107 * 263.99867 * 1 2 3 20 20 H 1.09003 * 109.47029 * 23.99618 * 1 2 3 21 21 H 1.08993 * 109.47399 * 143.99179 * 1 2 3 22 22 H 0.96996 * 119.99850 * 180.02562 * 6 5 3 23 23 H 1.08000 * 125.98789 * 0.03000 * 14 13 11 24 24 H 1.09003 * 109.46644 * 270.15619 * 17 16 15 25 25 H 1.08998 * 109.47274 * 30.15664 * 17 16 15 26 26 H 1.09000 * 109.46922 * 150.16114 * 17 16 15 27 27 H 1.08001 * 126.30227 * 179.88476 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1499 1.1863 0.0000 4 1 3.1650 1.2237 -0.3669 5 6 1.5386 2.3417 0.4720 6 7 0.4326 2.2588 1.1770 7 14 2.2891 4.0123 0.1045 8 1 2.3515 4.2144 -1.3654 9 1 1.4517 5.0761 0.7148 10 1 3.6601 4.0747 0.6714 11 6 2.1388 -1.1673 -0.0005 12 8 3.3509 -1.1697 0.1003 13 6 1.4070 -2.4403 -0.1231 14 6 0.0438 -2.6571 0.1799 15 7 -0.2281 -3.9107 -0.0576 16 7 0.9291 -4.5457 -0.5221 17 6 1.0368 -5.9557 -0.9048 18 6 1.9251 -3.6455 -0.5552 19 1 -0.3633 -0.1074 1.0220 20 1 -0.3633 0.9389 -0.4179 21 1 -0.3634 -0.8312 -0.6041 22 1 0.0058 3.0652 1.5061 23 1 -0.6512 -1.9150 0.5441 24 1 1.3152 -6.5484 -0.0334 25 1 0.0772 -6.3024 -1.2885 26 1 1.7980 -6.0655 -1.6772 27 1 2.9427 -3.8290 -0.8669 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049235.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:05 Heat of formation + Delta-G solvation = 67.246330 kcal Electronic energy + Delta-G solvation = -13524.790788 eV Core-core repulsion = 11092.757833 eV Total energy + Delta-G solvation = -2432.032954 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.80838 -37.90595 -34.59730 -33.13477 -31.46958 -29.67777 -27.37180 -25.83576 -24.58247 -21.58045 -20.60295 -18.92801 -17.07021 -16.45964 -15.49612 -15.18197 -14.62938 -14.07722 -13.81537 -13.65969 -12.91686 -12.52881 -12.36980 -12.29588 -11.62351 -11.24063 -11.12553 -10.63129 -10.50189 -10.33608 -10.21472 -9.09638 -8.93630 -8.40291 -8.03477 -7.59875 -6.28673 -3.79725 2.10889 2.75506 2.86152 3.26703 3.28145 3.32207 4.18364 4.43660 4.66288 5.06597 5.14895 5.21919 5.28691 5.37080 5.51780 5.91409 6.05908 6.30428 6.43663 6.87652 6.94943 7.22601 7.25717 7.60925 8.00117 8.22136 8.57378 9.25742 9.49619 10.10311 10.76657 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.071841 B = 0.008158 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.657679 B = 3431.291916 C = 3740.244667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.437 5.437 3 C -0.302 4.302 4 H 0.098 0.902 5 C 0.029 3.971 6 N -0.880 5.880 7 Si 0.927 3.073 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.516 3.484 12 O -0.597 6.597 13 C -0.250 4.250 14 C 0.064 3.936 15 N -0.315 5.315 16 N -0.378 5.378 17 C 0.104 3.896 18 C 0.093 3.907 19 H 0.052 0.948 20 H 0.076 0.924 21 H 0.039 0.961 22 H 0.268 0.732 23 H 0.201 0.799 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.385 -9.970 -3.957 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.154 5.154 3 C -0.430 4.430 4 H 0.116 0.884 5 C -0.174 4.174 6 N -0.519 5.519 7 Si 0.753 3.247 8 H -0.199 1.199 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.305 3.695 12 O -0.484 6.484 13 C -0.265 4.265 14 C -0.122 4.122 15 N -0.136 5.136 16 N -0.159 5.159 17 C -0.038 4.038 18 C -0.056 4.056 19 H 0.071 0.929 20 H 0.094 0.906 21 H 0.057 0.943 22 H 0.078 0.922 23 H 0.218 0.782 24 H 0.090 0.910 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.837 -10.847 -3.840 11.851 hybrid contribution 0.790 1.443 -0.038 1.646 sum -2.047 -9.404 -3.877 10.376 Atomic orbital electron populations 1.21940 0.81679 1.00807 1.00028 1.43344 1.05369 1.04478 1.62228 1.19614 0.99990 0.83738 1.39673 0.88409 1.25338 0.96734 1.00096 0.95211 1.70001 1.19507 1.29575 1.32783 0.85990 0.79002 0.80921 0.78740 1.19942 1.20983 1.19783 1.17063 0.86717 0.82130 0.83601 1.90581 1.13959 1.87003 1.56827 1.20714 0.94667 0.95988 1.15092 1.24862 0.95995 0.93342 0.98042 1.77059 1.06525 1.08355 1.21682 1.48262 1.07348 1.09258 1.51052 1.21801 1.04011 0.77017 1.00962 1.22811 0.94546 0.88727 0.99494 0.92939 0.90579 0.94270 0.92179 0.78227 0.90983 0.89487 0.89646 0.80292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.26 7.13 59.84 0.43 2.69 15 2 N -0.44 -11.64 3.01 -123.45 -0.37 -12.01 15 3 C -0.30 -8.60 9.23 -14.98 -0.14 -8.74 15 4 H 0.10 2.88 7.49 -52.48 -0.39 2.49 15 5 C 0.03 0.79 4.99 -17.46 -0.09 0.70 15 6 N -0.88 -23.70 10.88 55.50 0.60 -23.09 15 7 Si 0.93 20.90 29.58 -169.99 -5.03 15.87 15 8 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 11 C 0.52 13.46 7.59 -12.55 -0.10 13.37 15 12 O -0.60 -17.41 16.71 5.25 0.09 -17.32 15 13 C -0.25 -5.32 5.80 -105.06 -0.61 -5.93 15 14 C 0.06 1.22 9.72 -16.97 -0.16 1.05 15 15 N -0.31 -5.65 12.50 30.87 0.39 -5.26 15 16 N -0.38 -5.89 3.98 -67.57 -0.27 -6.16 15 17 C 0.10 0.99 11.44 59.85 0.68 1.67 15 18 C 0.09 1.65 11.37 -16.52 -0.19 1.46 15 19 H 0.05 1.20 7.32 -51.93 -0.38 0.82 15 20 H 0.08 1.82 6.64 -51.93 -0.34 1.47 15 21 H 0.04 0.77 5.02 -51.93 -0.26 0.51 15 22 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 23 H 0.20 3.54 5.09 -52.49 -0.27 3.28 15 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 15 25 H 0.09 0.74 8.14 -51.93 -0.42 0.31 15 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 15 27 H 0.18 2.71 8.06 -52.49 -0.42 2.29 15 LS Contribution 237.58 15.07 3.58 3.58 Total: -1.00 -33.77 237.58 -3.65 -37.42 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -2.47 Total: 0.70 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.17 Total: 6.27 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.35 Total: -46.53 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.09 Total: -17.32 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -33.77 -3.65 -37.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049235.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.671 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds