Wall clock time and date at job start Sun Mar 29 2020 21:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.36987 * 120.00247 * 2 1 4 4 H 1.08003 * 119.99675 * 203.09420 * 3 2 1 5 5 C 1.38970 * 120.00149 * 23.09092 * 3 2 1 6 6 N 1.31420 * 119.99785 * 14.71447 * 5 3 2 7 7 Si 1.86794 * 120.00109 * 194.71055 * 5 3 2 8 8 H 1.48504 * 109.46943 * 60.00470 * 7 5 3 9 9 H 1.48503 * 109.46913 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47532 * 299.99969 * 7 5 3 11 11 C 1.34780 * 119.99845 * 180.02562 * 2 1 3 12 12 O 1.21630 * 119.99827 * 185.49485 * 11 2 1 13 13 C 1.47352 * 119.99828 * 5.48802 * 11 2 1 14 14 C 1.41321 * 126.42360 * 338.05440 * 13 11 2 15 15 N 1.30446 * 108.02581 * 180.02562 * 14 13 11 16 16 N 1.39930 * 108.91467 * 359.76653 * 15 14 13 17 17 C 1.46505 * 125.75134 * 180.25682 * 16 15 14 18 18 C 1.34289 * 108.50043 * 0.39007 * 16 15 14 19 19 H 1.08999 * 109.47107 * 263.99867 * 1 2 3 20 20 H 1.09003 * 109.47029 * 23.99618 * 1 2 3 21 21 H 1.08993 * 109.47399 * 143.99179 * 1 2 3 22 22 H 0.96996 * 119.99850 * 180.02562 * 6 5 3 23 23 H 1.08000 * 125.98789 * 0.03000 * 14 13 11 24 24 H 1.09003 * 109.46644 * 270.15619 * 17 16 15 25 25 H 1.08998 * 109.47274 * 30.15664 * 17 16 15 26 26 H 1.09000 * 109.46922 * 150.16114 * 17 16 15 27 27 H 1.08001 * 126.30227 * 179.88476 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1499 1.1863 0.0000 4 1 3.1650 1.2237 -0.3669 5 6 1.5386 2.3417 0.4720 6 7 0.4326 2.2588 1.1770 7 14 2.2891 4.0123 0.1045 8 1 2.3515 4.2144 -1.3654 9 1 1.4517 5.0761 0.7148 10 1 3.6601 4.0747 0.6714 11 6 2.1388 -1.1673 -0.0005 12 8 3.3509 -1.1697 0.1003 13 6 1.4070 -2.4403 -0.1231 14 6 0.0438 -2.6571 0.1799 15 7 -0.2281 -3.9107 -0.0576 16 7 0.9291 -4.5457 -0.5221 17 6 1.0368 -5.9557 -0.9048 18 6 1.9251 -3.6455 -0.5552 19 1 -0.3633 -0.1074 1.0220 20 1 -0.3633 0.9389 -0.4179 21 1 -0.3634 -0.8312 -0.6041 22 1 0.0058 3.0652 1.5061 23 1 -0.6512 -1.9150 0.5441 24 1 1.3152 -6.5484 -0.0334 25 1 0.0772 -6.3024 -1.2885 26 1 1.7980 -6.0655 -1.6772 27 1 2.9427 -3.8290 -0.8669 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049235.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:05 Heat of formation + Delta-G solvation = 42.913408 kcal Electronic energy + Delta-G solvation = -13525.845942 eV Core-core repulsion = 11092.757833 eV Total energy + Delta-G solvation = -2433.088109 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.24567 -39.83862 -36.64297 -34.47377 -33.40469 -31.17178 -28.91432 -27.41023 -26.47802 -23.22286 -21.97974 -20.60928 -19.03110 -18.11427 -17.20328 -16.47446 -16.39384 -15.91193 -15.58717 -15.19891 -14.46634 -14.00140 -13.65022 -13.50555 -13.38354 -13.13009 -12.95183 -12.50543 -12.17769 -12.11689 -11.94744 -10.95630 -10.43048 -10.41097 -9.68326 -9.51088 -8.32720 -5.93669 0.68985 1.25211 1.43681 1.50487 1.54505 1.60158 2.31398 2.54028 3.10775 3.21473 3.72074 3.95448 4.25935 4.31543 4.47829 4.62447 4.68588 4.72844 4.83308 5.01797 5.32515 5.45557 5.49471 6.00994 6.14345 6.51371 6.61700 7.19270 7.49230 8.08853 8.71238 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.071841 B = 0.008158 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.657679 B = 3431.291916 C = 3740.244667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.454 5.454 3 C -0.345 4.345 4 H 0.073 0.927 5 C -0.003 4.003 6 N -0.895 5.895 7 Si 0.993 3.007 8 H -0.266 1.266 9 H -0.270 1.270 10 H -0.276 1.276 11 C 0.508 3.492 12 O -0.642 6.642 13 C -0.295 4.295 14 C 0.063 3.937 15 N -0.320 5.320 16 N -0.362 5.362 17 C 0.089 3.911 18 C 0.115 3.885 19 H 0.048 0.952 20 H 0.060 0.940 21 H 0.070 0.930 22 H 0.275 0.725 23 H 0.206 0.794 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -11.141 -4.559 12.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.171 5.171 3 C -0.473 4.473 4 H 0.091 0.909 5 C -0.205 4.205 6 N -0.533 5.533 7 Si 0.816 3.184 8 H -0.191 1.191 9 H -0.194 1.194 10 H -0.202 1.202 11 C 0.299 3.701 12 O -0.532 6.532 13 C -0.310 4.310 14 C -0.123 4.123 15 N -0.142 5.142 16 N -0.142 5.142 17 C -0.050 4.050 18 C -0.037 4.037 19 H 0.066 0.934 20 H 0.079 0.921 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.222 0.778 24 H 0.110 0.890 25 H 0.120 0.880 26 H 0.136 0.864 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.417 -12.061 -4.445 13.300 hybrid contribution 0.951 1.619 0.146 1.884 sum -2.466 -10.442 -4.299 11.558 Atomic orbital electron populations 1.21889 0.79799 1.01190 1.00184 1.43592 1.06671 1.04375 1.62419 1.19625 0.99928 0.85587 1.42130 0.90865 1.26133 0.97069 1.03036 0.94244 1.70069 1.20008 1.30833 1.32376 0.85014 0.77999 0.76489 0.78928 1.19065 1.19399 1.20158 1.17757 0.86538 0.83536 0.82242 1.90519 1.15945 1.87975 1.58748 1.20428 0.95854 0.95215 1.19497 1.24823 0.95172 0.94054 0.98244 1.77026 1.07633 1.07736 1.21770 1.48740 1.05946 1.10927 1.48573 1.22379 1.06137 0.73538 1.02945 1.23110 0.95642 0.87810 0.97127 0.93397 0.92091 0.91209 0.91550 0.77798 0.88956 0.88039 0.86431 0.77870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.19 7.13 127.77 0.91 6.10 15 2 N -0.45 -24.89 3.01 -662.72 -1.99 -26.88 15 3 C -0.34 -20.30 9.23 84.06 0.78 -19.53 15 4 H 0.07 4.55 7.49 -2.91 -0.02 4.53 15 5 C 0.00 -0.15 4.99 84.93 0.42 0.27 15 6 N -0.89 -48.40 10.88 21.67 0.24 -48.16 15 7 Si 0.99 43.01 29.58 68.60 2.03 45.03 15 8 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 9 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 11 C 0.51 27.23 7.59 86.64 0.66 27.89 15 12 O -0.64 -38.75 16.71 -4.13 -0.07 -38.81 15 13 C -0.30 -12.44 5.80 -20.15 -0.12 -12.56 15 14 C 0.06 2.33 9.72 85.66 0.83 3.16 15 15 N -0.32 -10.75 12.50 -56.25 -0.70 -11.45 15 16 N -0.36 -10.13 3.98 -367.68 -1.46 -11.59 15 17 C 0.09 1.30 11.44 127.77 1.46 2.77 15 18 C 0.12 3.81 11.37 84.29 0.96 4.77 15 19 H 0.05 2.22 7.32 -2.39 -0.02 2.20 15 20 H 0.06 2.95 6.64 -2.39 -0.02 2.94 15 21 H 0.07 2.75 5.02 -2.39 -0.01 2.74 15 22 H 0.27 13.85 8.31 -92.71 -0.77 13.08 15 23 H 0.21 7.14 5.09 -2.91 -0.01 7.12 15 24 H 0.09 1.09 8.14 -2.39 -0.02 1.07 15 25 H 0.10 1.28 8.14 -2.39 -0.02 1.26 15 26 H 0.12 1.05 8.14 -2.39 -0.02 1.03 15 27 H 0.20 5.62 8.06 -2.91 -0.02 5.60 15 Total: -1.00 -74.56 237.58 5.13 -69.43 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 1.19 Total: 9.56 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.90 Total: 12.87 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -3.93 Total: -98.09 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -0.07 Total: -38.81 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -74.56 5.13 -69.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049235.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.348 kcal (2) G-P(sol) polarization free energy of solvation -74.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds