Wall clock time and date at job start Sun Mar 29 2020 22:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 120.00141 * 2 1 4 4 H 1.08009 * 119.99953 * 322.03454 * 3 2 1 5 5 C 1.38810 * 120.00227 * 142.03468 * 3 2 1 6 6 N 1.31622 * 119.99631 * 157.02372 * 5 3 2 7 7 Si 1.86799 * 120.00366 * 337.02187 * 5 3 2 8 8 H 1.48499 * 109.46832 * 95.67872 * 7 5 3 9 9 H 1.48495 * 109.47503 * 215.68323 * 7 5 3 10 10 H 1.48503 * 109.46573 * 335.68198 * 7 5 3 11 11 C 1.46502 * 120.00188 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46837 * 90.00032 * 11 2 1 13 13 C 1.53003 * 109.46806 * 179.97438 * 12 11 2 14 14 N 1.46505 * 109.46872 * 180.02562 * 13 12 11 15 15 C 1.36879 * 126.39680 * 270.02937 * 14 13 12 16 16 C 1.34666 * 106.82072 * 179.97438 * 15 14 13 17 17 N 1.34134 * 108.01707 * 0.02562 * 16 15 14 18 18 C 1.30503 * 109.25685 * 359.97438 * 17 16 15 19 19 H 1.09001 * 109.47410 * 265.65182 * 1 2 3 20 20 H 1.08994 * 109.47316 * 25.65265 * 1 2 3 21 21 H 1.09000 * 109.47226 * 145.65083 * 1 2 3 22 22 H 0.97003 * 119.99711 * 179.97438 * 6 5 3 23 23 H 1.08997 * 109.47288 * 330.00129 * 11 2 1 24 24 H 1.09000 * 109.47008 * 209.99874 * 11 2 1 25 25 H 1.09005 * 109.47054 * 60.00317 * 12 11 2 26 26 H 1.09000 * 109.47192 * 299.99729 * 12 11 2 27 27 H 1.09005 * 109.47015 * 60.00342 * 13 12 11 28 28 H 1.09000 * 109.47064 * 299.99857 * 13 12 11 29 29 H 1.08003 * 126.58892 * 359.97438 * 15 14 13 30 30 H 1.08000 * 125.99307 * 180.25704 * 16 15 14 31 31 H 1.07999 * 125.64816 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0223 -0.5754 5 6 3.3175 1.3131 0.7395 6 7 4.2043 2.2305 0.4164 7 14 3.6304 0.1825 2.1932 8 1 4.4680 -0.9637 1.7573 9 1 4.3367 0.9338 3.2617 10 1 2.3351 -0.3216 2.7159 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 6 3.2181 -3.0357 -1.4411 14 7 3.4628 -3.4588 -2.8222 15 6 2.6443 -4.2443 -3.5882 16 6 3.2467 -4.3847 -4.7844 17 7 4.4019 -3.7040 -4.7495 18 6 4.5379 -3.1466 -3.5774 19 1 -0.3634 -0.0779 1.0247 20 1 -0.3633 0.9263 -0.4449 21 1 -0.3634 -0.8484 -0.5798 22 1 5.0202 2.3197 0.9334 23 1 1.6085 -2.0282 0.5147 24 1 3.1499 -1.1381 0.5143 25 1 3.0416 -0.9515 -1.9559 26 1 1.5001 -1.8416 -1.9555 27 1 2.6294 -3.7953 -0.9269 28 1 4.1705 -2.9046 -0.9275 29 1 1.6973 -4.6697 -3.2904 30 1 2.8647 -4.9440 -5.6256 31 1 5.3720 -2.5366 -3.2634 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045060241.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:01 Heat of formation + Delta-G solvation = 83.736086 kcal Electronic energy + Delta-G solvation = -13605.712298 eV Core-core repulsion = 11310.227488 eV Total energy + Delta-G solvation = -2295.484810 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.80208 -36.60870 -34.37960 -31.78245 -30.51596 -29.20604 -26.50388 -25.52177 -22.40645 -21.12838 -20.81263 -20.58073 -17.36097 -16.51781 -15.62677 -15.04484 -14.62370 -14.01130 -13.78779 -13.54961 -13.33207 -13.11242 -12.71742 -12.22449 -12.02166 -11.52055 -11.33142 -11.00700 -10.62355 -10.54207 -9.91235 -9.81206 -9.65758 -9.37784 -8.60791 -8.34847 -6.91945 -6.08685 -3.50483 2.26139 3.01615 3.18597 3.35461 3.38517 3.43384 4.42440 4.82139 4.83875 4.91096 5.08059 5.25926 5.37424 5.55082 5.58404 5.71246 5.85038 5.99868 6.13559 6.19890 6.40829 6.49394 6.62706 6.63657 6.81661 6.90983 7.37514 7.96274 8.25388 8.29496 8.88899 9.61305 10.02025 11.06885 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.037618 B = 0.008284 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.137850 B = 3379.099632 C = 3620.389964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.611 5.611 3 C -0.273 4.273 4 H 0.079 0.921 5 C 0.036 3.964 6 N -0.896 5.896 7 Si 0.877 3.123 8 H -0.286 1.286 9 H -0.299 1.299 10 H -0.270 1.270 11 C 0.142 3.858 12 C -0.149 4.149 13 C 0.101 3.899 14 N -0.450 5.450 15 C -0.059 4.059 16 C -0.039 4.039 17 N -0.504 5.504 18 C 0.184 3.816 19 H 0.008 0.992 20 H 0.046 0.954 21 H 0.026 0.974 22 H 0.264 0.736 23 H 0.040 0.960 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 -12.196 -2.682 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.335 5.335 3 C -0.402 4.402 4 H 0.096 0.904 5 C -0.165 4.165 6 N -0.537 5.537 7 Si 0.708 3.292 8 H -0.214 1.214 9 H -0.227 1.227 10 H -0.195 1.195 11 C 0.015 3.985 12 C -0.189 4.189 13 C -0.022 4.022 14 N -0.131 5.131 15 C -0.193 4.193 16 C -0.187 4.187 17 N -0.222 5.222 18 C -0.099 4.099 19 H 0.026 0.974 20 H 0.064 0.936 21 H 0.045 0.955 22 H 0.074 0.926 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.187 0.813 30 H 0.182 0.818 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -2.594 -11.966 -3.116 12.634 hybrid contribution -0.329 -0.567 1.540 1.674 sum -2.923 -12.533 -1.577 12.965 Atomic orbital electron populations 1.21088 0.84434 0.99132 0.97437 1.44014 1.00860 1.01904 1.86680 1.18808 1.06171 0.90800 1.24382 0.90392 1.25493 0.96789 0.96527 0.97689 1.69889 1.08426 1.36089 1.39307 0.86930 0.77892 0.79958 0.84469 1.21398 1.22698 1.19478 1.21065 0.96597 0.88087 0.92708 1.22585 0.99968 0.94321 1.02072 1.22103 1.02696 0.98539 0.78868 1.45745 1.17149 1.37052 1.13190 1.22693 0.99582 1.03134 0.93855 1.22231 0.93943 1.05006 0.97538 1.70270 1.19401 1.13065 1.19480 1.25018 0.93609 1.03448 0.87811 0.97424 0.93550 0.95525 0.92598 0.94152 0.92681 0.90355 0.92107 0.89493 0.88958 0.81343 0.81789 0.78063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.42 10.70 59.84 0.64 3.06 16 2 N -0.61 -14.15 2.47 -181.12 -0.45 -14.59 16 3 C -0.27 -7.50 9.88 -15.06 -0.15 -7.65 16 4 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 5 C 0.04 1.01 5.29 -17.43 -0.09 0.92 16 6 N -0.90 -26.72 13.97 55.49 0.78 -25.95 16 7 Si 0.88 21.34 25.10 -169.99 -4.27 17.07 16 8 H -0.29 -6.54 6.68 56.52 0.38 -6.16 16 9 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.14 2.82 4.53 -4.04 -0.02 2.81 16 12 C -0.15 -2.55 5.86 -26.73 -0.16 -2.71 16 13 C 0.10 1.38 6.15 -4.04 -0.02 1.35 16 14 N -0.45 -6.48 2.75 -118.57 -0.33 -6.80 16 15 C -0.06 -0.78 11.58 -16.56 -0.19 -0.97 16 16 C -0.04 -0.55 11.87 -17.81 -0.21 -0.77 16 17 N -0.50 -8.37 11.25 -14.66 -0.16 -8.53 16 18 C 0.18 2.81 12.56 -90.37 -1.14 1.68 16 19 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 20 H 0.05 0.89 8.00 -51.93 -0.42 0.48 16 21 H 0.03 0.44 8.10 -51.93 -0.42 0.02 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 23 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 24 H 0.06 1.20 3.38 -51.93 -0.18 1.02 16 25 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.17 1.72 8.06 -52.48 -0.42 1.30 16 30 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.20 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 263.67 15.07 3.97 3.97 Total: -1.00 -31.61 263.67 -6.19 -37.80 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -4.40 Total: -0.69 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -1.34 Total: -2.28 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.16 Total: -55.88 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.27 Total: 17.07 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.61 -6.19 -37.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045060241.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.539 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds