Wall clock time and date at job start Sun Mar 29 2020 22:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 120.00141 * 2 1 4 4 H 1.08009 * 119.99953 * 322.03454 * 3 2 1 5 5 C 1.38810 * 120.00227 * 142.03468 * 3 2 1 6 6 N 1.31622 * 119.99631 * 157.02372 * 5 3 2 7 7 Si 1.86799 * 120.00366 * 337.02187 * 5 3 2 8 8 H 1.48499 * 109.46832 * 95.67872 * 7 5 3 9 9 H 1.48495 * 109.47503 * 215.68323 * 7 5 3 10 10 H 1.48503 * 109.46573 * 335.68198 * 7 5 3 11 11 C 1.46502 * 120.00188 * 179.97438 * 2 1 3 12 12 C 1.52999 * 109.46837 * 90.00032 * 11 2 1 13 13 C 1.53003 * 109.46806 * 179.97438 * 12 11 2 14 14 N 1.46505 * 109.46872 * 180.02562 * 13 12 11 15 15 C 1.36879 * 126.39680 * 270.02937 * 14 13 12 16 16 C 1.34666 * 106.82072 * 179.97438 * 15 14 13 17 17 N 1.34134 * 108.01707 * 0.02562 * 16 15 14 18 18 C 1.30503 * 109.25685 * 359.97438 * 17 16 15 19 19 H 1.09001 * 109.47410 * 265.65182 * 1 2 3 20 20 H 1.08994 * 109.47316 * 25.65265 * 1 2 3 21 21 H 1.09000 * 109.47226 * 145.65083 * 1 2 3 22 22 H 0.97003 * 119.99711 * 179.97438 * 6 5 3 23 23 H 1.08997 * 109.47288 * 330.00129 * 11 2 1 24 24 H 1.09000 * 109.47008 * 209.99874 * 11 2 1 25 25 H 1.09005 * 109.47054 * 60.00317 * 12 11 2 26 26 H 1.09000 * 109.47192 * 299.99729 * 12 11 2 27 27 H 1.09005 * 109.47015 * 60.00342 * 13 12 11 28 28 H 1.09000 * 109.47064 * 299.99857 * 13 12 11 29 29 H 1.08003 * 126.58892 * 359.97438 * 15 14 13 30 30 H 1.08000 * 125.99307 * 180.25704 * 16 15 14 31 31 H 1.07999 * 125.64816 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0223 -0.5754 5 6 3.3175 1.3131 0.7395 6 7 4.2043 2.2305 0.4164 7 14 3.6304 0.1825 2.1932 8 1 4.4680 -0.9637 1.7573 9 1 4.3367 0.9338 3.2617 10 1 2.3351 -0.3216 2.7159 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4417 13 6 3.2181 -3.0357 -1.4411 14 7 3.4628 -3.4588 -2.8222 15 6 2.6443 -4.2443 -3.5882 16 6 3.2467 -4.3847 -4.7844 17 7 4.4019 -3.7040 -4.7495 18 6 4.5379 -3.1466 -3.5774 19 1 -0.3634 -0.0779 1.0247 20 1 -0.3633 0.9263 -0.4449 21 1 -0.3634 -0.8484 -0.5798 22 1 5.0202 2.3197 0.9334 23 1 1.6085 -2.0282 0.5147 24 1 3.1499 -1.1381 0.5143 25 1 3.0416 -0.9515 -1.9559 26 1 1.5001 -1.8416 -1.9555 27 1 2.6294 -3.7953 -0.9269 28 1 4.1705 -2.9046 -0.9275 29 1 1.6973 -4.6697 -3.2904 30 1 2.8647 -4.9440 -5.6256 31 1 5.3720 -2.5366 -3.2634 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045060241.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:01 Heat of formation + Delta-G solvation = 64.511128 kcal Electronic energy + Delta-G solvation = -13606.545955 eV Core-core repulsion = 11310.227488 eV Total energy + Delta-G solvation = -2296.318467 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.88739 -38.23465 -35.72384 -33.78611 -31.90940 -30.27993 -28.17422 -27.08516 -23.90522 -22.52421 -22.21244 -21.68474 -18.93519 -18.02732 -17.38359 -16.28738 -16.02004 -15.53356 -15.11551 -14.94632 -14.76001 -14.49766 -14.10869 -13.92791 -13.43077 -13.09165 -12.76277 -12.59511 -12.36515 -12.24252 -11.78706 -11.41024 -10.94187 -10.65014 -10.55370 -9.41043 -8.79182 -8.22401 -5.61862 1.18397 1.28077 1.43066 1.54017 1.95355 2.24425 2.40322 3.01890 3.40472 3.77515 3.89419 4.03217 4.16817 4.28515 4.35567 4.59407 4.63902 4.67062 4.71948 4.78866 4.98625 5.06123 5.10824 5.35319 5.44426 5.88414 5.91793 6.13573 6.28853 6.97144 7.16244 7.60510 8.01301 8.97631 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.037618 B = 0.008284 C = 0.007732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.137850 B = 3379.099632 C = 3620.389964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.627 5.627 3 C -0.269 4.269 4 H 0.033 0.967 5 C -0.022 4.022 6 N -0.949 5.949 7 Si 0.947 3.053 8 H -0.260 1.260 9 H -0.310 1.310 10 H -0.258 1.258 11 C 0.136 3.864 12 C -0.133 4.133 13 C 0.108 3.892 14 N -0.453 5.453 15 C -0.050 4.050 16 C -0.061 4.061 17 N -0.537 5.537 18 C 0.164 3.836 19 H 0.018 0.982 20 H 0.035 0.965 21 H 0.061 0.939 22 H 0.264 0.736 23 H 0.079 0.921 24 H 0.038 0.962 25 H 0.035 0.965 26 H 0.066 0.934 27 H 0.123 0.877 28 H 0.097 0.903 29 H 0.205 0.795 30 H 0.186 0.814 31 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -15.122 -1.682 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.352 5.352 3 C -0.398 4.398 4 H 0.051 0.949 5 C -0.218 4.218 6 N -0.592 5.592 7 Si 0.775 3.225 8 H -0.186 1.186 9 H -0.239 1.239 10 H -0.182 1.182 11 C 0.010 3.990 12 C -0.174 4.174 13 C -0.014 4.014 14 N -0.134 5.134 15 C -0.184 4.184 16 C -0.208 4.208 17 N -0.256 5.256 18 C -0.119 4.119 19 H 0.037 0.963 20 H 0.053 0.947 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.097 0.903 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.142 0.858 28 H 0.115 0.885 29 H 0.222 0.778 30 H 0.203 0.797 31 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.800 -14.936 -2.131 15.558 hybrid contribution -0.055 0.376 1.113 1.176 sum -3.855 -14.560 -1.018 15.096 Atomic orbital electron populations 1.21194 0.82316 1.00177 0.98561 1.44185 1.02377 1.01594 1.87053 1.18659 1.06280 0.91688 1.23217 0.94949 1.26162 0.96597 0.98791 1.00265 1.70031 1.09306 1.39110 1.40782 0.85798 0.78402 0.78473 0.79831 1.18641 1.23891 1.18244 1.21207 0.96053 0.87393 0.94311 1.22300 1.00050 0.95168 0.99875 1.22062 1.03079 0.97415 0.78840 1.45811 1.17067 1.37109 1.13459 1.23272 1.00142 1.01814 0.93130 1.22734 0.93607 1.05398 0.99035 1.70238 1.20941 1.14105 1.20346 1.25306 0.94591 1.03995 0.87994 0.96346 0.94651 0.92055 0.92709 0.90268 0.94450 0.94572 0.91522 0.85842 0.88472 0.77840 0.79702 0.77151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.45 10.70 127.77 1.37 5.82 16 2 N -0.63 -28.10 2.47 -726.95 -1.79 -29.89 16 3 C -0.27 -15.02 9.88 84.03 0.83 -14.19 16 4 H 0.03 2.06 8.06 -2.91 -0.02 2.03 16 5 C -0.02 -1.22 5.29 84.86 0.45 -0.77 16 6 N -0.95 -58.39 13.97 21.65 0.30 -58.09 16 7 Si 0.95 43.59 25.10 68.60 1.72 45.31 16 8 H -0.26 -10.78 6.68 99.48 0.66 -10.12 16 9 H -0.31 -14.72 7.11 99.48 0.71 -14.01 16 10 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 11 C 0.14 4.96 4.53 86.38 0.39 5.35 16 12 C -0.13 -4.25 5.86 30.59 0.18 -4.07 16 13 C 0.11 2.56 6.15 86.38 0.53 3.09 16 14 N -0.45 -11.84 2.75 -529.05 -1.46 -13.29 16 15 C -0.05 -1.16 11.58 83.09 0.96 -0.20 16 16 C -0.06 -1.61 11.87 83.52 0.99 -0.62 16 17 N -0.54 -17.41 11.25 -200.31 -2.25 -19.66 16 18 C 0.16 4.85 12.56 180.26 2.26 7.12 16 19 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 20 H 0.03 1.33 8.00 -2.39 -0.02 1.32 16 21 H 0.06 1.81 8.10 -2.39 -0.02 1.79 16 22 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 23 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 24 H 0.04 1.51 3.38 -2.39 -0.01 1.50 16 25 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.20 3.12 8.06 -2.91 -0.02 3.10 16 30 H 0.19 3.83 8.06 -2.91 -0.02 3.80 16 31 H 0.21 5.45 8.06 -2.91 -0.02 5.43 16 Total: -1.00 -70.20 263.67 5.54 -64.66 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.05 Total: 9.44 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 7.97 Total: 1.52 kcal Atomic # 7 Polarization: -115.73 SS G_CDS: -5.20 Total: -120.93 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.72 Total: 45.31 kcal Total: -70.20 5.54 -64.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045060241.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.170 kcal (2) G-P(sol) polarization free energy of solvation -70.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds