Wall clock time and date at job start Sun Mar 29 2020 21:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30498 * 125.65610 * 2 1 4 4 C 1.34124 * 109.25997 * 180.29535 * 3 2 1 5 5 C 1.34672 * 108.01906 * 359.72779 * 4 3 2 6 6 N 1.35046 * 125.65078 * 179.83184 * 2 1 3 7 7 C 1.46507 * 126.39576 * 359.97390 * 6 2 1 8 8 C 1.53005 * 109.47121 * 84.71169 * 7 6 2 9 9 N 1.46499 * 109.46946 * 180.02562 * 8 7 6 10 10 C 1.46505 * 120.00078 * 89.99837 * 9 8 7 11 11 C 1.36939 * 119.99878 * 270.00595 * 9 8 7 12 12 H 1.08000 * 120.00168 * 142.04787 * 11 9 8 13 13 C 1.38811 * 119.99729 * 322.03628 * 11 9 8 14 14 N 1.31622 * 119.99735 * 157.04555 * 13 11 9 15 15 Si 1.86796 * 120.00231 * 337.04587 * 13 11 9 16 16 H 1.48507 * 109.47114 * 95.68301 * 15 13 11 17 17 H 1.48493 * 109.47419 * 215.68074 * 15 13 11 18 18 H 1.48503 * 109.47153 * 335.68778 * 15 13 11 19 19 H 1.09000 * 109.46762 * 270.17074 * 1 2 3 20 20 H 1.08999 * 109.46961 * 30.17152 * 1 2 3 21 21 H 1.08999 * 109.47435 * 150.17236 * 1 2 3 22 22 H 1.08003 * 125.98859 * 179.72402 * 4 3 2 23 23 H 1.08000 * 126.58647 * 179.97438 * 5 4 3 24 24 H 1.09001 * 109.46757 * 324.71616 * 7 6 2 25 25 H 1.08997 * 109.46856 * 204.71752 * 7 6 2 26 26 H 1.08990 * 109.46622 * 60.00194 * 8 7 6 27 27 H 1.09003 * 109.47096 * 299.99826 * 8 7 6 28 28 H 1.09004 * 109.46662 * 85.63543 * 10 9 8 29 29 H 1.08996 * 109.46940 * 205.63779 * 10 9 8 30 30 H 1.08998 * 109.46866 * 325.64229 * 10 9 8 31 31 H 0.97000 * 119.99930 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0603 0.0000 4 6 3.5544 0.6817 -0.0065 5 6 3.5926 -0.6644 -0.0046 6 7 2.2941 -1.0974 0.0032 7 6 1.8425 -2.4911 0.0078 8 6 1.5583 -2.9399 -1.4270 9 7 1.1062 -4.3333 -1.4223 10 6 -0.3216 -4.6398 -1.3039 11 6 2.0181 -5.3494 -1.5283 12 1 1.8818 -6.2586 -0.9616 13 6 3.1174 -5.2108 -2.3644 14 7 4.1992 -5.9305 -2.1539 15 14 3.0617 -4.0030 -3.7883 16 1 3.6802 -2.7185 -3.3724 17 1 3.8110 -4.5625 -4.9417 18 1 1.6494 -3.7675 -4.1826 19 1 -0.3633 0.0031 1.0277 20 1 -0.3633 0.8884 -0.5165 21 1 -0.3634 -0.8915 -0.5111 22 1 4.4099 1.3410 -0.0123 23 1 4.4776 -1.2833 -0.0090 24 1 0.9327 -2.5762 0.6021 25 1 2.6188 -3.1230 0.4393 26 1 2.4681 -2.8547 -2.0212 27 1 0.7820 -2.3079 -1.8584 28 1 -0.7819 -4.6136 -2.2917 29 1 -0.4454 -5.6326 -0.8716 30 1 -0.7996 -3.9011 -0.6607 31 1 4.9675 -5.8334 -2.7379 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045060288.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:31 Heat of formation + Delta-G solvation = 82.865981 kcal Electronic energy + Delta-G solvation = -13982.697411 eV Core-core repulsion = 11687.174871 eV Total energy + Delta-G solvation = -2295.522541 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.70996 -36.47084 -33.53407 -31.72501 -31.45960 -28.59050 -26.58244 -26.23866 -23.68233 -21.08789 -20.94623 -19.34520 -16.99897 -16.67011 -15.46918 -15.02929 -14.47183 -13.96721 -13.55233 -13.25500 -13.07880 -12.69098 -12.57911 -12.49142 -12.14809 -11.93520 -11.78211 -11.20101 -10.82011 -10.63030 -10.10006 -9.72380 -9.63960 -9.26628 -8.66935 -8.01429 -7.03855 -6.17391 -3.61104 2.42058 3.17779 3.23131 3.37137 3.41460 3.44945 4.37295 4.73918 4.86379 5.12335 5.21865 5.28458 5.56421 5.60069 5.67476 5.72741 5.84694 5.93077 6.07739 6.10508 6.20455 6.35239 6.56164 6.57858 6.76412 7.11062 7.57477 7.86105 8.20228 8.42797 8.77717 9.51819 9.90418 10.97352 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.032536 B = 0.011277 C = 0.009680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.390982 B = 2482.345748 C = 2891.879568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.192 3.808 3 N -0.501 5.501 4 C -0.043 4.043 5 C -0.050 4.050 6 N -0.443 5.443 7 C 0.081 3.919 8 C 0.128 3.872 9 N -0.606 5.606 10 C 0.122 3.878 11 C -0.282 4.282 12 H 0.083 0.917 13 C 0.041 3.959 14 N -0.892 5.892 15 Si 0.873 3.127 16 H -0.284 1.284 17 H -0.297 1.297 18 H -0.269 1.269 19 H 0.075 0.925 20 H 0.085 0.915 21 H 0.073 0.927 22 H 0.165 0.835 23 H 0.171 0.829 24 H 0.083 0.917 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.011 0.989 29 H 0.049 0.951 30 H 0.028 0.972 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 8.335 3.675 10.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.070 4.070 3 N -0.221 5.221 4 C -0.191 4.191 5 C -0.184 4.184 6 N -0.125 5.125 7 C -0.044 4.044 8 C 0.000 4.000 9 N -0.330 5.330 10 C -0.023 4.023 11 C -0.410 4.410 12 H 0.100 0.900 13 C -0.161 4.161 14 N -0.532 5.532 15 Si 0.703 3.297 16 H -0.212 1.212 17 H -0.224 1.224 18 H -0.194 1.194 19 H 0.094 0.906 20 H 0.104 0.896 21 H 0.092 0.908 22 H 0.182 0.818 23 H 0.189 0.811 24 H 0.101 0.899 25 H 0.118 0.882 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.735 8.864 3.619 11.160 hybrid contribution 0.662 -0.299 -0.878 1.140 sum -5.073 8.565 2.740 10.325 Atomic orbital electron populations 1.20138 0.85478 1.03769 1.03042 1.23184 0.95595 0.81743 1.06452 1.70145 1.02252 1.28616 1.21112 1.22164 0.94675 0.92732 1.09516 1.22797 0.87629 0.96722 1.11284 1.45656 1.06308 1.08185 1.52344 1.22934 1.01661 0.77186 1.02608 1.21493 0.99190 0.86550 0.92721 1.43990 1.02397 1.00797 1.85828 1.21152 0.84437 0.99047 0.97640 1.18819 1.02366 0.97733 1.22119 0.89971 1.25482 0.96064 0.97109 0.97417 1.69871 1.02864 1.42495 1.37920 0.86994 0.78280 0.80499 0.83928 1.21192 1.22441 1.19409 0.90627 0.89625 0.90781 0.81765 0.81139 0.89876 0.88242 0.92057 0.93663 0.97096 0.93211 0.95347 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.04 36.01 0.36 -0.48 16 2 C 0.19 3.28 7.90 -155.41 -1.23 2.05 16 3 N -0.50 -9.17 11.25 -10.81 -0.12 -9.29 16 4 C -0.04 -0.72 11.87 -17.81 -0.21 -0.93 16 5 C -0.05 -0.86 11.58 -16.56 -0.19 -1.05 16 6 N -0.44 -7.87 2.75 -113.90 -0.31 -8.19 16 7 C 0.08 1.45 6.00 -4.04 -0.02 1.42 16 8 C 0.13 2.65 4.86 -4.04 -0.02 2.63 16 9 N -0.61 -13.68 2.47 -181.12 -0.45 -14.13 16 10 C 0.12 2.26 10.70 59.85 0.64 2.90 16 11 C -0.28 -7.54 9.88 -15.06 -0.15 -7.69 16 12 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 13 C 0.04 1.15 5.29 -17.43 -0.09 1.05 16 14 N -0.89 -26.20 13.97 55.49 0.78 -25.42 16 15 Si 0.87 21.88 25.10 -169.99 -4.27 17.62 16 16 H -0.28 -7.04 6.68 56.52 0.38 -6.67 16 17 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 20 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.07 0.90 7.34 -51.93 -0.38 0.51 16 22 H 0.17 2.28 8.06 -52.48 -0.42 1.85 16 23 H 0.17 2.67 8.06 -52.49 -0.42 2.25 16 24 H 0.08 1.31 7.94 -51.93 -0.41 0.90 16 25 H 0.10 1.92 8.13 -51.93 -0.42 1.50 16 26 H 0.06 1.44 3.38 -51.93 -0.18 1.27 16 27 H 0.05 0.87 7.57 -51.93 -0.39 0.47 16 28 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.05 0.90 8.00 -51.93 -0.42 0.48 16 30 H 0.03 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 261.92 15.07 3.95 3.95 Total: -1.00 -30.97 261.92 -5.66 -36.63 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.32 Total: -1.07 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.91 Total: -0.10 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.11 Total: -57.03 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.27 Total: 17.62 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.97 -5.66 -36.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045060288.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.491 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds