Wall clock time and date at job start Sun Mar 29 2020 21:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30498 * 125.65610 * 2 1 4 4 C 1.34124 * 109.25997 * 180.29535 * 3 2 1 5 5 C 1.34672 * 108.01906 * 359.72779 * 4 3 2 6 6 N 1.35046 * 125.65078 * 179.83184 * 2 1 3 7 7 C 1.46507 * 126.39576 * 359.97390 * 6 2 1 8 8 C 1.53005 * 109.47121 * 84.71169 * 7 6 2 9 9 N 1.46499 * 109.46946 * 180.02562 * 8 7 6 10 10 C 1.46505 * 120.00078 * 89.99837 * 9 8 7 11 11 C 1.36939 * 119.99878 * 270.00595 * 9 8 7 12 12 H 1.08000 * 120.00168 * 142.04787 * 11 9 8 13 13 C 1.38811 * 119.99729 * 322.03628 * 11 9 8 14 14 N 1.31622 * 119.99735 * 157.04555 * 13 11 9 15 15 Si 1.86796 * 120.00231 * 337.04587 * 13 11 9 16 16 H 1.48507 * 109.47114 * 95.68301 * 15 13 11 17 17 H 1.48493 * 109.47419 * 215.68074 * 15 13 11 18 18 H 1.48503 * 109.47153 * 335.68778 * 15 13 11 19 19 H 1.09000 * 109.46762 * 270.17074 * 1 2 3 20 20 H 1.08999 * 109.46961 * 30.17152 * 1 2 3 21 21 H 1.08999 * 109.47435 * 150.17236 * 1 2 3 22 22 H 1.08003 * 125.98859 * 179.72402 * 4 3 2 23 23 H 1.08000 * 126.58647 * 179.97438 * 5 4 3 24 24 H 1.09001 * 109.46757 * 324.71616 * 7 6 2 25 25 H 1.08997 * 109.46856 * 204.71752 * 7 6 2 26 26 H 1.08990 * 109.46622 * 60.00194 * 8 7 6 27 27 H 1.09003 * 109.47096 * 299.99826 * 8 7 6 28 28 H 1.09004 * 109.46662 * 85.63543 * 10 9 8 29 29 H 1.08996 * 109.46940 * 205.63779 * 10 9 8 30 30 H 1.08998 * 109.46866 * 325.64229 * 10 9 8 31 31 H 0.97000 * 119.99930 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0603 0.0000 4 6 3.5544 0.6817 -0.0065 5 6 3.5926 -0.6644 -0.0046 6 7 2.2941 -1.0974 0.0032 7 6 1.8425 -2.4911 0.0078 8 6 1.5583 -2.9399 -1.4270 9 7 1.1062 -4.3333 -1.4223 10 6 -0.3216 -4.6398 -1.3039 11 6 2.0181 -5.3494 -1.5283 12 1 1.8818 -6.2586 -0.9616 13 6 3.1174 -5.2108 -2.3644 14 7 4.1992 -5.9305 -2.1539 15 14 3.0617 -4.0030 -3.7883 16 1 3.6802 -2.7185 -3.3724 17 1 3.8110 -4.5625 -4.9417 18 1 1.6494 -3.7675 -4.1826 19 1 -0.3633 0.0031 1.0277 20 1 -0.3633 0.8884 -0.5165 21 1 -0.3634 -0.8915 -0.5111 22 1 4.4099 1.3410 -0.0123 23 1 4.4776 -1.2833 -0.0090 24 1 0.9327 -2.5762 0.6021 25 1 2.6188 -3.1230 0.4393 26 1 2.4681 -2.8547 -2.0212 27 1 0.7820 -2.3079 -1.8584 28 1 -0.7819 -4.6136 -2.2917 29 1 -0.4454 -5.6326 -0.8716 30 1 -0.7996 -3.9011 -0.6607 31 1 4.9675 -5.8334 -2.7379 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045060288.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:31 Heat of formation + Delta-G solvation = 63.759410 kcal Electronic energy + Delta-G solvation = -13983.525935 eV Core-core repulsion = 11687.174871 eV Total energy + Delta-G solvation = -2296.351064 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.01604 -38.17406 -35.06049 -33.70602 -32.59815 -30.07590 -28.08465 -27.72351 -25.28413 -22.84963 -22.29002 -20.64356 -18.92268 -18.07512 -17.27006 -16.46111 -16.01832 -15.45732 -15.10588 -14.94225 -14.49125 -14.31028 -13.87308 -13.77086 -13.55495 -13.30902 -13.10956 -12.85003 -12.63713 -12.34831 -11.97697 -11.63570 -10.99901 -10.80118 -10.58968 -9.30777 -8.87925 -8.30254 -5.69167 1.10873 1.22174 1.33597 1.42075 1.86161 2.15458 2.31525 2.96843 3.36444 3.63358 3.74138 3.98175 4.12388 4.31125 4.44256 4.46531 4.69824 4.71572 4.74372 4.79362 4.90085 5.03268 5.10015 5.14017 5.43075 5.81804 5.85168 6.10281 6.29455 6.87028 7.12723 7.51018 7.92701 8.88719 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.032536 B = 0.011277 C = 0.009680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.390982 B = 2482.345748 C = 2891.879568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.192 3.808 3 N -0.528 5.528 4 C -0.045 4.045 5 C -0.072 4.072 6 N -0.453 5.453 7 C 0.097 3.903 8 C 0.128 3.872 9 N -0.619 5.619 10 C 0.118 3.882 11 C -0.266 4.266 12 H 0.053 0.947 13 C -0.008 4.008 14 N -0.937 5.937 15 Si 0.932 3.068 16 H -0.283 1.283 17 H -0.305 1.305 18 H -0.262 1.262 19 H 0.096 0.904 20 H 0.096 0.904 21 H 0.084 0.916 22 H 0.188 0.812 23 H 0.177 0.823 24 H 0.111 0.889 25 H 0.078 0.922 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.016 0.984 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.371 9.867 3.822 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 N -0.248 5.248 4 C -0.193 4.193 5 C -0.206 4.206 6 N -0.135 5.135 7 C -0.028 4.028 8 C 0.001 3.999 9 N -0.343 5.343 10 C -0.025 4.025 11 C -0.396 4.396 12 H 0.071 0.929 13 C -0.206 4.206 14 N -0.580 5.580 15 Si 0.762 3.238 16 H -0.211 1.211 17 H -0.233 1.233 18 H -0.186 1.186 19 H 0.115 0.885 20 H 0.115 0.885 21 H 0.103 0.897 22 H 0.205 0.795 23 H 0.194 0.806 24 H 0.129 0.871 25 H 0.097 0.903 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.600 10.428 3.773 13.444 hybrid contribution 1.166 -0.750 -0.842 1.622 sum -6.434 9.678 2.931 11.985 Atomic orbital electron populations 1.20349 0.82511 1.04842 1.04773 1.24044 0.97283 0.81072 1.04646 1.70191 1.02899 1.29359 1.22386 1.22613 0.95204 0.92998 1.08463 1.23076 0.88068 0.97266 1.12201 1.45693 1.06606 1.08127 1.53121 1.22600 1.02155 0.77163 1.00866 1.21453 0.98525 0.85848 0.94062 1.44111 1.03530 1.00612 1.86094 1.21311 0.82069 1.00335 0.98812 1.18748 1.02677 0.97759 1.20407 0.92947 1.25984 0.96027 0.99095 0.99531 1.69973 1.03729 1.45150 1.39191 0.86045 0.78258 0.78608 0.80931 1.21113 1.23350 1.18624 0.88501 0.88511 0.89706 0.79483 0.80581 0.87055 0.90344 0.95024 0.91382 0.96527 0.93409 0.91371 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 10.04 71.24 0.72 -0.71 16 2 C 0.19 6.00 7.90 138.13 1.09 7.09 16 3 N -0.53 -18.19 11.25 -188.13 -2.12 -20.30 16 4 C -0.05 -1.46 11.87 83.52 0.99 -0.47 16 5 C -0.07 -2.43 11.58 83.09 0.96 -1.47 16 6 N -0.45 -15.15 2.75 -514.26 -1.41 -16.56 16 7 C 0.10 3.25 6.00 86.38 0.52 3.77 16 8 C 0.13 4.97 4.86 86.38 0.42 5.39 16 9 N -0.62 -26.68 2.47 -726.93 -1.79 -28.48 16 10 C 0.12 3.99 10.70 127.77 1.37 5.36 16 11 C -0.27 -14.21 9.88 84.03 0.83 -13.38 16 12 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 13 C -0.01 -0.47 5.29 84.86 0.45 -0.02 16 14 N -0.94 -56.35 13.97 21.65 0.30 -56.05 16 15 Si 0.93 45.48 25.10 68.60 1.72 47.20 16 16 H -0.28 -13.63 6.68 99.48 0.66 -12.97 16 17 H -0.31 -15.12 7.11 99.48 0.71 -14.41 16 18 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 19 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 20 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.08 1.64 7.34 -2.39 -0.02 1.62 16 22 H 0.19 4.86 8.06 -2.91 -0.02 4.84 16 23 H 0.18 5.49 8.06 -2.91 -0.02 5.47 16 24 H 0.11 3.10 7.94 -2.39 -0.02 3.08 16 25 H 0.08 2.98 8.13 -2.39 -0.02 2.96 16 26 H 0.03 1.44 3.38 -2.39 -0.01 1.43 16 27 H 0.07 2.34 7.57 -2.39 -0.02 2.32 16 28 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.05 1.62 8.00 -2.39 -0.02 1.60 16 30 H 0.07 1.76 8.10 -2.39 -0.02 1.74 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -66.14 261.92 5.10 -61.04 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.06 Total: 7.59 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: 7.34 Total: 5.55 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -5.02 Total: -121.39 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.72 Total: 47.20 kcal Total: -66.14 5.10 -61.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045060288.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.800 kcal (2) G-P(sol) polarization free energy of solvation -66.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds